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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggttctgttttacttcaaattttgcaaatactaattagacactgttcctgcattgactggtctttgagcattccaaaattgtttcatttcttcagGTTTATTTGGCAAATTTGCGTCTTAGAGGAGTTGATACTGATGTACTAGTCTCTGCATATGAGCCCATTGTTATAAA

Basic information

species Glycine max
transcript GLYMA01G05430.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192326836|gb|FK015108.1|FK015108
EST:     GCAATTTCTAAAGGACGGCAAGGAAGGGAAGCACAAAATATTGTGAAA                         GTTTATTTGGCAAATTTGCGTCTTAGAGGAGTTGATACTGATGTACTAGTC
genomic: GCAATTTCTAAAGGACGGCAAGGAAGGGAAGCACAAAATATTGTGAAAgtaggttctg ... atttcttcagGTTTATTTGGCAAATTTGCGTCTTAGAGGAGTTGATACTGATGTACTAGTC
EST: gi|7232488|gb|AW567843.1|AW567843
EST:     GCAATTTCTAAAGGACGGCAAGGAAGGGAAGCACAAAATATTGTGAAA                         GTTTATTTGGCAAATTTGCGTCTTAGAGGAGTTGATACTGATGTACTAGTC
genomic: GCAATTTCTAAAGGACGGCAAGGAAGGGAAGCACAAAATATTGTGAAAgtaggttctg ... atttcttcagGTTTATTTGGCAAATTTGCGTCTTAGAGGAGTTGATACTGATGTACTAGTC
EST: gi|298182312|gb|HO026487.1|HO026487
EST:     GCAATTTCTAAAGGACGGCAAGGAAGGGAAGCACAAAATATTGTGAAA                         GTTTATTCGGCAAATTTGCGTCTTAGAGGAGTTGATACTGATGTACTAGTC
genomic: GCAATTTCTAAAGGACGGCAAGGAAGGGAAGCACAAAATATTGTGAAAgtaggttctg ... atttcttcagGTTTATTTGGCAAATTTGCGTCTTAGAGGAGTTGATACTGATGTACTAGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actgttcctgcattgactggtctttgagcattccaaaattgtttcatttcttcagGTTTATTTGGCAAATTTGCGTCTTAGAGGAGTTGATACTGATGTACTAGTCTCTGCATATGAGCCCATTGTTATAAA
          cattgac  putative branch site (score: 3)
                                      ttgtttcatttcttc  putative PPT
                                  aaaattgtttcattt  TA-rich tract