1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aacaaattctactaaattatattgactgttgctgaattctaccttcacatagcgaggagcttccggggttttagttttactgaatcctctgtttgttcagGTTGCATACTTTGTGGGAGTTCAAATAGAAGACAGCAATAAAAACGATGATAGCCATTGTTTGAGTCCTGAGAAGAGGCAGCTTAATGTGGTTGGTGTAG
species | Glycine max |
transcript | GLYMA01G04920.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAG GTTGCATACTTTGTGGGAGTTCAAATAGAAGACAGCAATAAAAACGAATGAEST: gi|254348791|gb|GR852470.1|GR852470
genomic: CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGgtaatcttga ... gtttgttcagGTTGCATACTTTGTGGGAGTTCAAATAGAAGACAGCAATAAAAACGA-TGA
EST: CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAG GTTGCATACTTTGTGGGAGTTCAAATAGAAGACAGCAATAAAAACGATGAT
genomic: CATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGgtaatcttga ... gtttgttcagGTTGCATACTTTGTGGGAGTTCAAATAGAAGACAGCAATAAAAACGATGAT
cacatagcgaggagcttccggggttttagttttactgaatcctctgtttgttcagGTTGCATACTTTGTGGGAGTTCAAATAGAAGACAGCAATAAAAACGATGATAGCCATTGTTTGAGTCCTGAGAAGAGGCAGCTTAATGTGGTTGGTGTAG
tcctctgtttgttc CT-rich tract
ttttagtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacaaattctactaaattatattgactgttgctgaattctaccttcacatagcgaggagcttccggggttttagttttactgaatcctctgtttgttcagGTTGCATACTTTGTGGGAGTTCAAATAGAAGACAGCAATAAAAACGATGATAGCCATTGTTTGAGTCCTGAGAAGAGGCAGCTTAATGTGGTTGGTGTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - -ctgttgc
- - - - - - - - - - - - - - - - tgaattc
- - - - - - - - - - - - - - - - - - - - -ccttcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggttt