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...gaagatgtaattgagtttaaggtgtatattgtgctgatgccgtcatggtatactctgaaatatgaacttctaatgtattggtatgttttatttggtgcagTTATGGTATTGCTGCAATCTCTCCATTTTCTCACCGACTGAGTTTTGACAACTTGCCTGTGGATATTCAACACCTACGTTGTAAAGTAAACTTCCAAGCT
species | Glycine max |
transcript | GLYMA01G02850.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CATGCATCAGCCTACTGGTATCTGGAGAATGTTTTGCCTGTCCTACAGAG TTATGGTATTGCTGCAATCTCTCCATTTTCTCACCGACTGAGTTTTGACAAEST: gi|193434178|gb|FK400232.1|FK400232
genomic: CATGCATCAGCCTACTGGTATCTGGAGAATGTTTTGCCTGTCCTACAGAGgttggtatct ... tttggtgcagTTATGGTATTGCTGCAATCTCTCCATTTTCTCACCGACTGAGTTTTGACAA
EST: CATGCATCAGCCTACTGGTATCTGGAGAATGTTTTGCCTGTCCTACAGAG TTATGGTATTGCTGCAATCTCTCCATTTTCTCACCGACTGAGTTTTGACAAEST: gi|26043675|gb|CA782127.1|CA782127
genomic: CATGCATCAGCCTACTGGTATCTGGAGAATGTTTTGCCTGTCCTACAGAGgttggtatct ... tttggtgcagTTATGGTATTGCTGCAATCTCTCCATTTTCTCACCGACTGAGTTTTGACAA
EST: CATGCATCAGCCTACTGGTATCTGGAGAATGTTTTGCCTGTCCTACAGAG TTATGGTATTGCTGCAATCTCTCCATTTTCTCACCGACTGAGTEST: gi|6481903|gb|AW201174.1|AW201174
genomic: CATGCATCAGCCTACTGGTATCTGGAGAATGTTTTGCCTGTCCTACAGAGgttggtatct ... tttggtgcagTTATGGTATTGCTGCAATCTCTCCATTTTCTCACCGACTGAGT
EST: CATGCATCAGCCTACTGGTATCTGGAGAATGTTTTGCCTGTCCTACAGAG TTATGGTATTGCTGCAATCTCTCCATTTTCTCACCGACTGAGTTTTGACAAEST: gi|21677209|gb|BQ629560.1|BQ629560
genomic: CATGCATCAGCCTACTGGTATCTGGAGAATGTTTTGCCTGTCCTACAGAGgttggtatct ... tttggtgcagTTATGGTATTGCTGCAATCTCTCCATTTTCTCACCGACTGAGTTTTGACAA
EST: GGTATCTGGAGAATGTTTTGCCTGTCCTACAGAG TTATGGTATTGCTGCAATCTCTCCATTTTCTCACCGACTGAGTTTTGACAAEST: gi|193604713|gb|FK560378.1|FK560378
genomic: GGTATCTGGAGAATGTTTTGCCTGTCCTACAGAGgttggtatct ... tttggtgcagTTATGGTATTGCTGCAATCTCTCCATTTTCTCACCGACTGAGTTTTGACAA
EST: CATGCATCAGCCTACTGGTATCTGGAGAATGTTTTGCCTGTCCTACAGAG TTATGGTATTGCTGCAATCTCTCCATTTTCTCACC
genomic: CATGCATCAGCCTACTGGTATCTGGAGAATGTTTTGCCTGTCCTACAGAGgttggtatct ... tttggtgcagTTATGGTATTGCTGCAATCTCTCCATTTTCTCACC
tggtatactctgaaatatgaacttctaatgtattggtatgttttatttggtgcagTTATGGTATTGCTGCAATCTCTCCATTTTCTCACCGACTGAGTTTTGACAACTTGCCTGTGGATATTCAACACCTACGTTGTAAAGTAAACTTCCAAGCT
ttctaat putative branch site (score: 2)
ttttattt putative PPT
tatgttttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaagatgtaattgagtttaaggtgtatattgtgctgatgccgtcatggtatactctgaaatatgaacttctaatgtattggtatgttttatttggtgcagTTATGGTATTGCTGCAATCTCTCCATTTTCTCACCGACTGAGTTTTGACAACTTGCCTGTGGATATTCAACACCTACGTTGTAAAGTAAACTTCCAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT