1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...agaaatagtatgtaggaaacatgtcattaaggtagataaactattttcttcttgaagcatatatgcttatttttgcttcctcttggatcaatttatacagTTGCCACGGGCTCGGAACAGCAGCTTTATCTGCCAAGGAACCTGAGGCTCTTCCATTTTGTGCCATTGCTTATGGTCTGACTGGGATATTTGGATCTATA
species | Glycine max |
transcript | GLYMA01G01340.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAACTCCGTCTTCGTGATCCAATTGCTCGTGGAATAGCAACCGCATCTAG TTGCCACGGGCTCGGAACAGCAGCTTTATCTGCCAAGGAACCTGAGGCTCTEST: gi|192322156|gb|FK014052.1|FK014052
genomic: AAACTCCGTCTTCGTGATCCAATTGCTCGTGGAATAGCAACCGCATCTAGgtatattctg ... atttatacagTTGCCACGGGCTCGGAACAGCAGCTTTATCTGCCAAGGAACCTGAGGCTCT
EST: AAACTCCGTCTTCGTGATCCAATTGCTCGTGGAATAGCAACCGCATCTAG TTGCCACGGGCTCGGAACAGCAGCTTTATCTGCCAAGGAACCTGAGGCTCTEST: gi|14999186|gb|BI320247.1|BI320247
genomic: AAACTCCGTCTTCGTGATCCAATTGCTCGTGGAATAGCAACCGCATCTAGgtatattctg ... atttatacagTTGCCACGGGCTCGGAACAGCAGCTTTATCTGCCAAGGAACCTGAGGCTCT
EST: AAACTCCGTCTTCGTGATCCAATTGCTCGTGGAATAGCAACCGCATCTAG TTGCCACGGGCTCGGAACAGCAGCTTTATCTGCCAAGGAACCTGAGGCTCT
genomic: AAACTCCGTCTTCGTGATCCAATTGCTCGTGGAATAGCAACCGCATCTAGgtatattctg ... atttatacagTTGCCACGGGCTCGGAACAGCAGCTTTATCTGCCAAGGAACCTGAGGCTCT
ttcttcttgaagcatatatgcttatttttgcttcctcttggatcaatttatacagTTGCCACGGGCTCGGAACAGCAGCTTTATCTGCCAAGGAACCTGAGGCTCTTCCATTTTGTGCCATTGCTTATGGTCTGACTGGGATATTTGGATCTATA
atatatgcttattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaaatagtatgtaggaaacatgtcattaaggtagataaactattttcttcttgaagcatatatgcttatttttgcttcctcttggatcaatttatacagTTGCCACGGGCTCGGAACAGCAGCTTTATCTGCCAAGGAACCTGAGGCTCTTCCATTTTGTGCCATTGCTTATGGTCTGACTGGGATATTTGGATCTATA
- - - - tatgtag
- - - - - - - - - acatgtc
- - - - - - - - - - - - - - - - - gataaac
- - - - - - - - - - - - - - - - - - - - - - - -cttcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatata