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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgattgtttccttttacacctcccactctcatctgttacccgcacatttgtattttaaaaaagttataaactaacattgtaaactgatgttacagTGCCACGACTTTTTACGGCTGGTATAGCTGAATTCTATGAGGAGTATTACAAAAATAAGGGTGTCAATATCATTAAAGGAACTGTTGCTGTTGGATTCAC

Basic information

species Glycine max
transcript GLYMA0169S00210.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|308098764|gb|HO760505.1|HO760505
EST:     GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTA                         TGCCACGACTTTTTACGGCTGGTATAGCTGAATTCTATGAGGAGTATTACA
genomic: GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTAgtaagtgatt ... gatgttacagTGCCACGACTTTTTACGGCTGGTATAGCTGAATTCTATGAGGAGTATTACA
EST: gi|23725657|gb|BU760790.1|BU760790
EST:     TCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTA                         TGCCACGACTTTTTACGGCTGGTATAGCTGAATTCTATGAGGAGTATTACA
genomic: TCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTAgtaagtgatt ... gatgttacagTGCCACGACTTTTTACGGCTGGTATAGCTGAATTCTATGAGGAGTATTACA
EST: gi|193622620|gb|FK569658.1|FK569658
EST:     GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTA                         TGCCACGACTTTTTACGGCTGGTATAGCTGAATTCTATGAGGAGTATTA
genomic: GAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTAgtaagtgatt ... gatgttacagTGCCACGACTTTTTACGGCTGGTATAGCTGAATTCTATGAGGAGTATTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgcacatttgtattttaaaaaagttataaactaacattgtaaactgatgttacagTGCCACGACTTTTTACGGCTGGTATAGCTGAATTCTATGAGGAGTATTACAAAAATAAGGGTGTCAATATCATTAAAGGAACTGTTGCTGTTGGATTCAC
     atttgtattttaaaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtgattgtttccttttacacctcccactctcatctgttacccgcacatttgtattttaaaaaagttataaactaacattgtaaactgatgttacagTGCCACGACTTTTTACGGCTGGTATAGCTGAATTCTATGAGGAGTATTACAAAAATAAGGGTGTCAATATCATTAAAGGAACTGTTGCTGTTGGATTCAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT