1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...attctttaactttagcaataatgcaacatggcacatatgcacaagcctgttttgtcgaacctgacattgctgatgtcctaatggaatatttattttgcagGGTCAAATGGGATCAATCTCTACTTCAGACAGTCCACAGCAAGCAATGAGAAATGGTCAAACATATGAAACTTCTCATCAAGGTGAGCTAGCAAATGCAG
species | Glycine max |
transcript | GLYMA20G36140.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TAATTCTACCTCAGGGAGTGGTTTCAGTGCCAGGGTGGAGTGCATACAGT GGTCAAATGGGATCAATCTCTACTTCAGACAGTCCACAGCAAGCAATGAGAEST: gi|8283911|gb|BE021470.1|BE021470
genomic: TAATTCTACCTCAGGGAGTGGTTTCAGTGCCAGGGTGGAGTGCATACAGTgtaagctcat ... tattttgcagGGTCAAATGGGATCAATCTCTACTTCAGACAGTCCACAGCAAGCAATGAGA
EST: TAATTCTACCTCAGGGAGTGGTTTCAGTGCCAGGGTGGAGTGCATACAGT GGTCAAATGGG
genomic: TAATTCTACCTCAGGGAGTGGTTTCAGTGCCAGGGTGGAGTGCATACAGTgtaagctcat ... tattttgcagGGTCAAATGGG
cctgttttgtcgaacctgacattgctgatgtcctaatggaatatttattttgcagGGTCAAATGGGATCAATCTCTACTTCAGACAGTCCACAGCAAGCAATGAGAAATGGTCAAACATATGAAACTTCTCATCAAGGTGAGCTAGCAAATGCAG
tcctaat putative branch site (score: 2)
tttatttt putative PPT
taatggaatatttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attctttaactttagcaataatgcaacatggcacatatgcacaagcctgttttgtcgaacctgacattgctgatgtcctaatggaatatttattttgcagGGTCAAATGGGATCAATCTCTACTTCAGACAGTCCACAGCAAGCAATGAGAAATGGTCAAACATATGAAACTTCTCATCAAGGTGAGCTAGCAAATGCAG
- - - - - - - - - -aatgcaa
- - - - - - - - - - - - - catggca
- - - - - - - - - - - - - - - - - -tatgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctgaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctaatgg