Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctatacggtcattaaatgttggggaataaaatggtaaattagacatgataaattccaatgggtaactggattgatgtatgcaaattttgctttcctctagGACTTGGTTCAAAGTGACAGGGATGATCCCAGCCTACCACTGGTTACTGCACCTTTTGGGCATGCCTCCCAG

Basic information

species Glycine max
transcript GLYMA20G30610.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G30610.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os04g34440.1 (Oryza sativa), 3'ss of exon 5
ctatacggtcattaaatgttggggaataaaatggtaaat--tagacatgataaattccaatgggtaactggattgatgtatgcaaattttgctttcctcta----gGACTTGGTTCAAAGTGACAGGGATGATCCCAGCCTACCACTGGTTACTGCACCTTTTGGGCATGCCTCCCAG
   |    | |||||  ||       |  | |  |  ||  |   |   |   ||  | ||   || ||  |||  |   ||||| || | | |   | ||    |||     |||||   || ||||||||||| ||||||||| |||| ||||| || ||||||||||| || |||
---ttgttttattaatcgtcacttcttccactcattgatggtcatctcaaagcatctcgatat-tatcttcatt--ttcttgcaatttatacgtctttgtacacagGAACGTATTCAAGCGGATAGGGATGATCCAAGCCTACCATTGGTCACTGCCCCATTTGGGCATGCTTCACAG

upper sequence: GLYMA20G30610.1 (Glycine max), 3'ss of exon 5
lower sequence: AT1G43690.1 (Arabidopsis thaliana), 3'ss of exon 5
ctatacggtcattaaatgttggggaataaaatggtaaattagacatgataaattccaatgggtaactggattgatgt--atgcaaattttgctttcctctagGACTTGGTTCAAAGTGACAGGGATGATCCCAGCCTACCACTGGTTACTGCACCTTTTGGGCATGCCTCCCAG
  ||    |   |  | ||  |        ||      || |   |  ||  |  | ||   |  ||  | |   ||  ||| | | |||  |       |||| |  ||||||   |||||||||||||| | ||| || || || |||||||| ||||| ||||||||||||
-catttcatttctctaggtcagctcgatggatctctcctttg-tttcttatgtgtctattactgcctaaaatagcgttaatggataattttgtgatgaacagGATTCAGTTCAAGCCGACAGGGATGATCCAAACCTCCCCCTAGTAACTGCACCATTTGGACATGCCTCCCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgataaattccaatgggtaactggattgatgtatgcaaattttgctttcctctagGACTTGGTTCAAAGTGACAGGGATGATCCCAGCCTACCACTGGTTACTGCACCTTTTGGGCATGCCTCCCAG
                                       ttttgctttcctct  CT-rich tract
                                    aaatttt  TA-rich tract