1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gcataccaaaacaaaaataagtgcaatttattttttcttctttgatgtgaaacacttttaataattacatcattaattctcattatctacataatggcagGTGCACAACCTGGAGCAGGTTAACAAGCATTTGGAATCTCAG
species | Glycine max |
transcript | GLYMA20G29250.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACGCAGAAGCTGATATCACGAATTGACGAATTACATGGAAAG GTGCACAACCTGGAGCAGGTTAACAAGCATTTGGAATCTEST: gi|7029262|gb|AW459045.1|AW459045
genomic: ACGCAGAAGCTGATATCACGAATTGACGAATTACATGGAAAGgtatgcaatt ... ataatggcagGTGCACAACCTGGAGCAGGTTAACAAGCATTTGGAATCT
EST: ACGCAGAAGCTGATATCACGAATTGACGAATTACATGGAAAG GTGCACAACCTGGAGCAGGTTAACAAGCATTTGGAATCTCAG
genomic: ACGCAGAAGCTGATATCACGAATTGACGAATTACATGGAAAGgtatgcaatt ... ataatggcagGTGCACAACCTGGAGCAGGTTAACAAGCATTTGGAATCTCAG
tgtgaaacacttttaataattacatcattaattctcattatctacataatggcagGTGCACAACCTGGAGCAGGTTAACAAGCATTTGGAATCTCAG
cattaat putative branch site (score: 3)
ttttaataattacatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcataccaaaacaaaaataagtgcaatttattttttcttctttgatgtgaaacacttttaataattacatcattaattctcattatctacataatggcagGTGCACAACCTGGAGCAGGTTAACAAGCATTTGGAATCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
gcatacc
- - - - - - -aaaataa
- - - - - - - - - - - - - - - - - - - - - tgatgtg