Sequence
atgc intronic sequence ATGC exonic sequencegtagattagggaatttactgtcttttgtctgatactttacatcgtgaatcttgatgcgtgtaagtagtcatttaagtattccaatttgcagggtggtttgaatattgataagGGTTATTATGATTACAAAAAATGTATTGGTTTGAAGGTGAAGCCACGACAGGGCGATGGACTTTTATTTTATTCATTGTTACCAAACGGGAAAATTGATA
Basic information
species | Glycine max |
transcript | GLYMA20G26800.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G26800.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv03s0091g00540.t01 (Vitis vinifera), 3'ss of exon 6
---------gtagattagggaatttactgtcttttgtctgatacttta-catc-gtgaatcttgatgcgtgta-agtagtcatttaagtattccaatttgcagggtggtttgaatattgataagGGTTATTATGATTACAAAAAATGTATTGGTTTGAAGGTGAAGCCACGACAGGGCGATGGACTTTTATTTTATTCATTGTTACCAAACGGGAAAATTGATA
| | ||| | | |||| | ||| || | | || |||| | | ||| | | || |||||||| | | | || || ||||| || |||||||| ||| | | ||| || |||||| ||||| ||||| |||||||||||| || ||||||||||||||||||||| |||| ||||
gtgagatgggaaaatttgtcagactactcttatttttccctttttataacatccatatgtgttggc-catatagagtagtcaccttaatgttttgatctgcagCATGACTTGAATATCAATACG------TTCAATTCCAGAAAATGCATTGGCTTGAAAGTGAAGCCACGAAGAGGGGATGGACTTTTATTTTATTCAGTGTTTCCAA---------------
upper sequence: GLYMA20G26800.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv03s0091g00520.t01 (Vitis vinifera), 3'ss of exon 6
gt-agattagggaatttactg---tcttttgtctgatactttacat------cgtgaatcttgatgcgtgta-agtagtcatttaagtattccaatttg--cagggtggtttgaatattgataagGGTTATTATGATTACAAAAAATGTATTGGTTTGAAGGTGAAGCCACGACAGGGCGATGGACTTTTATTTTATTCATTGTTACCAAACGGGAAAATTGATA
|| |||| || ||||| || ||| |||| | | ||| || | | | | || || || || |||||||| | | | || || || ||| || |||||||| | || ||| | |||||||||||||||| ||||||||||| |||||||||| | || ||||| ||| ||||||||||| |||| |
gtgagatggggaaatttgttgacttctcttgtttttcattttttataatatccataatttatgttgggtctagagtagtcaccttaattttttgatgtgtgcagCATGACTTGAATATCGGTACGGGCT---ATGATTACAAAAAATGCATTGGTTTGAAAGTGAAGCCACAAAGAGGGGATGGGCTTCTATTTTATTCAGTGTTTC------------------ atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtgtaagtagtcatttaagtattccaatttgcagggtggtttgaatattgataagGGTTATTATGATTACAAAAAATGTATTGGTTTGAAGGTGAAGCCACGACAGGGCGATGGACTTTTATTTTATTCATTGTTACCAAACGGGAAAATTGATA
tttgaatattgataa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtagattagggaatttactgtcttttgtctgatactttacatcgtgaatcttgatgcgtgtaagtagtcatttaagtattccaatttgcagggtggtttgaatattgataagGGTTATTATGATTACAAAAAATGTATTGGTTTGAAGGTGAAGCCACGACAGGGCGATGGACTTTTATTTTATTCATTGTTACCAAACGGGAAAATTGATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA