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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctttatccgctaagttgtatattattaacttgaacttttggtttcttatagttttatctggcggcttgtgtttgaagttattttacttttcttttacatatgaacccagTTTGTACATGCATGTGAGCTAAAAGGGCATACAGATTGGATCCGGAGTTTGGACTTCTCATTACCTATAAGCATCAATGGGGAAGTAAACAATATTTTTC

Basic information

species Glycine max
transcript GLYMA20G25600.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G25600.1 (Glycine max), 3'ss of exon 5
lower sequence: AT1G49540.1 (Arabidopsis thaliana), 3'ss of exon 5
gtatctttatccgctaagttgtatattattaacttgaacttttggtttcttatagttttatctggcggcttgtgtttgaagttattttacttttcttttacatatgaacccagTTTGTACATGCATGTGAGCTAAAAGGGCATACAGATTGGATCCGGAGTTTGGACTTCTCATTACCTATAAGCATCAATGGGGAAGTAAACAATATTTTTC
                 ||  |     |||  |||          ||  |   |  |  ||        |||||     |||| ||||  |||  |  |   |       ||||||     ||  |||||||| ||||| || || || ||||| |||||||||||||||||||||||  ||  ||  |  |  ||| ||  ||||| | || 
-----------------gtgcttcccgattcgcttttgtgccaaattattctcaactaaattcaa----ttgtg---agagtttttttggtttcatccttttt-------cagTTTACTTCTGTTTGTGAGCTTAAAGGCCACACGGACTGGATTCGGAGTTTGGACTTCTCATTACCGTTACACACAACAGAAGAAATACCCAATAGTATTA

upper sequence: GLYMA20G25600.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv01s0011g04130.t01 (Vitis vinifera), 3'ss of exon 5
gtatctttatccgctaagttgtatattattaacttgaacttttggtttcttatagttttatctggcggcttgtg-tttgaagttattttacttttcttttacatatgaacccagTTTGTACATGCATGTGAGCTAAAAGGGCATACAGATTGGATCCGGAGTTTGGACTTCTCATTACCTATAAGCATCAATGGGGAAGTAAACAATATTTTTC
         |  | |||  |     ||||  |  |  | ||  |||||| |        || ||||    ||    ||||| || |||   |||| ||| |  ||||    |||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||| || |||||| ||| |||||  | |  || || | |||| |
--------gtatg-taatcttcggcttatccatcttca-ttacggtttcctgc------atttggccttctgcaacttgaaattttttctgttttgtttcatttatgctagcagTTTGTTCATGCTTGTGAGTTAAAAGGGCATACAGATTGGATCCGGAGTTTGGACTTCTCCTTGCCTATATGCACCAATGATGGAACAAGCAGTCTTTTAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatctggcggcttgtgtttgaagttattttacttttcttttacatatgaacccagTTTGTACATGCATGTGAGCTAAAAGGGCATACAGATTGGATCCGGAGTTTGGACTTCTCATTACCTATAAGCATCAATGGGGAAGTAAACAATATTTTTC
                    aagttattttactttt  TA-rich tract