1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatgtggattttagaagttaaattccttgcttaatgatttttatctgcaatatatttcagtttttttttttttcaaatcagtttggcgtcatagttatttgggtggaggtttatgtttggatagttggttttttgtcttatgtgatattttgattctttatttttctcaacttaaatatctttcataaatattagGGTATCCCTGAGCAAGCTGAAGCTCCACTTGTAGCCCGGGCGCCTGTAAGTGCTCAACCTACAAATCCTCCTGCTGATGCTCCACAAACAGCACAACCTG
species | Glycine max |
transcript | GLYMA20G24850.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTCGAGCTGCCTACAACAACCCTGAGAGAGCTGTTGAATATTTGTATACA GGTATCCCTGAGCAAGCTGAAGCTCCACTTGTAGCCCGGGCGCCTGTAAGTEST: gi|254324070|gb|GR840495.1|GR840495
genomic: TTCGAGCTGCCTACAACAACCCTGAGAGAGCTGTTGAATATTTGTATACAgtatgtggat ... taaatattagGGTATCCCTGAGCAAGCTGAAGCTCCACTTGTAGCCCGGGCGCCTGTAAGT
EST: TTCGAGCTGCCTACAACAACCCTGAGAGAGCTGTTGAATATTTGTATACA GGTATCCCTGAGCAAGCTGAAGCTCCACTTGTAGCCCGGGCGCCTGTAAGTEST: gi|9819511|gb|BE555024.1|BE555024
genomic: TTCGAGCTGCCTACAACAACCCTGAGAGAGCTGTTGAATATTTGTATACAgtatgtggat ... taaatattagGGTATCCCTGAGCAAGCTGAAGCTCCACTTGTAGCCCGGGCGCCTGTAAGT
EST: TTCGAGCTGCCTACAACAACCCTGAGAGAGCTGTTGAATATTTGTATACA GGTATCCCTGAGCAAGCTGAAGCTCCACTTGTAGCCCGGGCGCCTGTAAGTEST: gi|22525766|gb|BU084577.1|BU084577
genomic: TTCGAGCTGCCTACAACAACCCTGAGAGAGCTGTTGAATATTTGTATACAgtatgtggat ... taaatattagGGTATCCCTGAGCAAGCTGAAGCTCCACTTGTAGCCCGGGCGCCTGTAAGT
EST: TTCGAGCTGCCTACAACAACCCTGAGAGAGCTGTTGAATATTTGTATACA GGTATCCCTGAGCAAGCTGAAGCTCCACTTGTAGCCCGGGCGCCTGTAAGTEST: gi|21256745|gb|BQ453633.1|BQ453633
genomic: TTCGAGCTGCCTACAACAACCCTGAGAGAGCTGTTGAATATTTGTATACAgtatgtggat ... taaatattagGGTATCCCTGAGCAAGCTGAAGCTCCACTTGTAGCCCGGGCGCCTGTAAGT
EST: AACCCTGAGAGAGCTGTTGAATATTTGTATACA GGTATCCCTGAGCAAGCTGAAGCTCCACTTGTAGCCCGGGCGCCTGTAAGTEST: gi|16995756|gb|BM085128.1|BM085128
genomic: AACCCTGAGAGAGCTGTTGAATATTTGTATACAgtatgtggat ... taaatattagGGTATCCCTGAGCAAGCTGAAGCTCCACTTGTAGCCCGGGCGCCTGTAAGT
EST: TTCGAGCTGCCTACAACAACCCTGAGAGAGCTGTTGAATATTTGTATACA GGTATCCCTGAGCAAGCTGAAGCTCCACTTGTAGCCCGGGCGCCTGTAAGT
genomic: TTCGAGCTGCCTACAACAACCCTGAGAGAGCTGTTGAATATTTGTATACAgtatgtggat ... taaatattagGGTATCCCTGAGCAAGCTGAAGCTCCACTTGTAGCCCGGGCGCCTGTAAGT
tgtgatattttgattctttatttttctcaacttaaatatctttcataaatattagGGTATCCCTGAGCAAGCTGAAGCTCCACTTGTAGCCCGGGCGCCTGTAAGTGCTCAACCTACAAATCCTCCTGCTGATGCTCCACAAACAGCACAACCTG
ttttgat putative branch site (score: 4)
tctttcat putative PPT
tttatttttctcaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtggattttagaagttaaattccttgcttaatgatttttatctgcaatatatttcagtttttttttttttcaaatcagtttggcgtcatagttatttgggtggaggtttatgtttggatagttggttttttgtcttatgtgatattttgattctttatttttctcaacttaaatatctttcataaatattagGGTATCCCTGAGCAAGCTGAAGCTCCACTTGTAGCCCGGGCGCCTGTAAGTGCTCAACCTACAAATCCTCCTGCTGATGCTCCACAAACAGCACAACCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT