1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgttatagttaggagttaggaccatatatggaatcagaattgtttttaaaagatctctaatcgaattaattgggtctaaaccctaaacttcctttttcagGTGAATGTAACAGCTGATCATCGAATTATTTATGGGGCTGACTTGGCCGCTTTCCTCCAGACATTCTCGAAAATCATTGAAAACCCAGAAAGCCTGACAT
species | Glycine max |
transcript | GLYMA20G24830.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGTTCTGGCTGATAAAGATGGATTCTTCAGCGTGAAGAATAAAATGCTG GTGAGTGTAACAGCTGATCATCGAATTATTTATGGGGCTGACTTGGCCGCTEST: gi|208183505|gb|GD987411.1|GD987411
genomic: CTGTTCTGGCTGATAAAGATGGATTCTTCAGCGTGAAGAATAAAATGCTGgtgagttact ... cctttttcagGTGAATGTAACAGCTGATCATCGAATTATTTATGGGGCTGACTTGGCCGCT
EST: GAAGAATAAAATGCTG GTGAATGTAACAGCTGATCATCGAATTATTTATGGGGCTGACTTGGCCGCTEST: gi|19053677|gb|BM732344.1|BM732344
genomic: GAAGAATAAAATGCTGgtgagttact ... cctttttcagGTGAATGTAACAGCTGATCATCGAATTATTTATGGGGCTGACTTGGCCGCT
EST: TGTTCTGGCTGATAAAGATGGATTCTTCAGCGTGAAGAAATAAA-TGCTG GTGAATGTAACAGCTGATCATCGAATTATT-ATGGGGEST: gi|9985549|gb|BE659657.1|BE659657
genomic: TGTTCTGGCTGATAAAGATGGATTCTTCAGCGTGAAGAA-TAAAATGCTGgtgagttact ... cctttttcagGTGAATGTAACAGCTGATCATCGAATTATTTATGGGG
EST: CTGTTCTGGCTGATAAAGATGGATTCTTCAGCGTGAAGAATAAAATGCTG GTGAATGTAACAGCTGATCATCGAATTATTTATGGGGCTGACTTGGCCGCTEST: gi|6134907|gb|AW133300.1|AW133300
genomic: CTGTTCTGGCTGATAAAGATGGATTCTTCAGCGTGAAGAATAAAATGCTGgtgagttact ... cctttttcagGTGAATGTAACAGCTGATCATCGAATTATTTATGGGGCTGACTTGGCCGCT
EST: CTGTTCTGGCTGATAAAGATGGATTCTTCAGCGTGAAGAATAAAATGCTG GTGAATGTAACAGCTGATCATCGAATTATTTATGGGGCTGACTTGGCCGCTEST: gi|14011336|gb|BG726189.1|BG726189
genomic: CTGTTCTGGCTGATAAAGATGGATTCTTCAGCGTGAAGAATAAAATGCTGgtgagttact ... cctttttcagGTGAATGTAACAGCTGATCATCGAATTATTTATGGGGCTGACTTGGCCGCT
EST: CTGTTCTGGCTGATAAAGATGGATTCTTCAGCGTGAAGAATAAAATGCTG GTGAATGTAACAGCTGATCATCGAATTATTTATGGGGCTGACTTGGCCGCTEST: gi|31464480|gb|CD406508.1|CD406508
genomic: CTGTTCTGGCTGATAAAGATGGATTCTTCAGCGTGAAGAATAAAATGCTGgtgagttact ... cctttttcagGTGAATGTAACAGCTGATCATCGAATTATTTATGGGGCTGACTTGGCCGCT
EST: CTGTTCTGGCTGATAAAGATGGATTCTTCAGCGTGAAGAATAAAATGCTG GTGAATGTAACAGCTGATCATCGAATTATTTATGGGGCTGACTTGGCCGCTEST: gi|21257189|gb|BQ454077.1|BQ454077
genomic: CTGTTCTGGCTGATAAAGATGGATTCTTCAGCGTGAAGAATAAAATGCTGgtgagttact ... cctttttcagGTGAATGTAACAGCTGATCATCGAATTATTTATGGGGCTGACTTGGCCGCT
EST: CTGTTCTGGCTGATAAAGATGGATTCTTCAGCGTGAAGAATAAAATGCTG GTGAATGTAACAGCTGATCATCGAATTATTTATGGGGCTGACTTGGCCGCTEST: gi|18735643|gb|BM528886.1|BM528886
genomic: CTGTTCTGGCTGATAAAGATGGATTCTTCAGCGTGAAGAATAAAATGCTGgtgagttact ... cctttttcagGTGAATGTAACAGCTGATCATCGAATTATTTATGGGGCTGACTTGGCCGCT
EST: CTGTTCTGGCTGATAAAGATGGATTCTTCAGCGTGAAGAATAAAATGCTG GTGAATGTAACAGCTGATCATCGAATTATTTATGGGGCTGACTTGGCCGCTEST: gi|208054335|gb|GD854472.1|GD854472
genomic: CTGTTCTGGCTGATAAAGATGGATTCTTCAGCGTGAAGAATAAAATGCTGgtgagttact ... cctttttcagGTGAATGTAACAGCTGATCATCGAATTATTTATGGGGCTGACTTGGCCGCT
EST: CTGTTCTGGCTGATAAAGATGGATTCTTCAGCGTGAAGAATAAAATGCTG GTGAATGTAACAGCTGATCATCGAATTATTTATGGGGEST: gi|31466163|gb|CD408191.1|CD408191
genomic: CTGTTCTGGCTGATAAAGATGGATTCTTCAGCGTGAAGAATAAAATGCTGgtgagttact ... cctttttcagGTGAATGTAACAGCTGATCATCGAATTATTTATGGGG
EST: CTGTTCTGGCTGATAAAGATGGATTCTTCAGCGTGAAGAATAAAATGCTG GTGAATGTAACAGCTGATCATCGAATTATTTATGGGGCTGACTTGGCCGCT
genomic: CTGTTCTGGCTGATAAAGATGGATTCTTCAGCGTGAAGAATAAAATGCTGgtgagttact ... cctttttcagGTGAATGTAACAGCTGATCATCGAATTATTTATGGGGCTGACTTGGCCGCT
ttaaaagatctctaatcgaattaattgggtctaaaccctaaacttcctttttcagGTGAATGTAACAGCTGATCATCGAATTATTTATGGGGCTGACTTGGCCGCTTTCCTCCAGACATTCTCGAAAATCATTGAAAACCCAGAAAGCCTGACAT
ccctaaa putative branch site (score: 3)
cttcctttttc CT-rich tract
taatcgaattaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttatagttaggagttaggaccatatatggaatcagaattgtttttaaaagatctctaatcgaattaattgggtctaaaccctaaacttcctttttcagGTGAATGTAACAGCTGATCATCGAATTATTTATGGGGCTGACTTGGCCGCTTTCCTCCAGACATTCTCGAAAATCATTGAAAACCCAGAAAGCCTGACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctaaacc