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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgttcatccatcgacgagttttaagcagattctgttttcatgtagacatggcctaattcccccctccaccccgtttgctaaccaatttcagATGGTGGTAGAAGAAATGAACATATTGACAACCATATTTCTGAGATATGATAATCAAAAGGTCATCATCCCTAACAATGTCCTTGCTACCAAGGCCATAT

Basic information

species Glycine max
transcript GLYMA20G23910.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G23910.1 (Glycine max), 3'ss of exon 5
lower sequence: AT1G78610.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaatgttcatccatcgacgagttttaagcagattctgttttcatgtagacatggcctaattcccccctccaccccgtttgctaaccaatttcagATGGTGGTAGAAGAAATGAACATATTGACAACCATATTTCTGAGATATGATAATCAAAAGGTCATCATCCCTAACAATGTCCTTGCTACCAAGGCCATAT
                    |  || ||  |  |  |   |    ||   |||     |||||     |  |      ||  |      ||||||||||| || ||||| |||||||||||||||||  | ||  |||||| |||||| || || ||| |   ||| |||| | | ||    || ||  ||||  
------------------gtaacttcaaaaaactagtaactaatagttctcatttttcaattctaatgtttaaaaaacttcttg-----tttcagATGGTTGTGGAAGAGATGAACATATTGACAACAGTTTTCTTGAGATTTGATAACCAGAAAGTCGTGTACCCGAACAGTCTTCTCTGGACTAAATCCATCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51342542|gb|CO983522.1|CO983522
EST:     TCATGCACCCATTTGATGTGGGAGATAGATGTGAAATTGATGGGGTTCAG                         ATGGTGGTAGAAGAAATGAACATATTGACAACCATATTTCTGAGATATGAT
genomic: TCATGCACCCATTTGATGTGGGAGATAGATGTGAAATTGATGGGGTTCAGgtaatgttca ... ccaatttcagATGGTGGTAGAAGAAATGAACATATTGACAACCATATTTCTGAGATATGAT
EST: gi|7146732|gb|AW508654.1|AW508654
EST:     TCATGCACCCATTTGATGTGGGAGATAGATGTGAAATTGATGGGGTTCAG                         ATGGTGGTAGAAGAAATGAACATATTGACAACCATATTTCTGAGATATGAT
genomic: TCATGCACCCATTTGATGTGGGAGATAGATGTGAAATTGATGGGGTTCAGgtaatgttca ... ccaatttcagATGGTGGTAGAAGAAATGAACATATTGACAACCATATTTCTGAGATATGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcatgtagacatggcctaattcccccctccaccccgtttgctaaccaatttcagATGGTGGTAGAAGAAATGAACATATTGACAACCATATTTCTGAGATATGATAATCAAAAGGTCATCATCCCTAACAATGTCCTTGCTACCAAGGCCATAT
                                       tgctaac  putative branch site (score: 1)
                                               aatttca  TA-rich tract