Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataccttttctaaaaggcctctcatgttatatgaactttgcaagggtactatgtggtatatactgacttgcttgtcctgtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGATCCTGAAGCCAAGAAG

Basic information

species Glycine max
transcript GLYMA20G23080.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4289620|gb|AI437497.1|AI437497
EST:     ATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGATCCTGAAGCCAAGAAG
genomic: ATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAACCAGAGgtaatacctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGATCCTGAAGCCAAGAAG
EST: gi|298193745|gb|HO040393.1|HO040393
EST:     ATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAGCCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGATCCTGAAGCCAAGAAG
genomic: ATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAACCAGAGgtaatacctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGATCCTGAAGCCAAGAAG
EST: gi|13790097|gb|BG652688.1|BG652688
EST:     ATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGATCCTGAAGCCAAGAAG
genomic: ATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAACCAGAGgtaatacctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGATCCTGAAGCCAAGAAG
EST: gi|7147510|gb|AW509432.1|AW509432
EST:     ATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGATCCTGAAGCCAAGAAG
genomic: ATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAACCAGAGgtaatacctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGATCCTGAAGCCAAGAAG
EST: gi|22521717|gb|BU080528.1|BU080528
EST:     ATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGATCCTGAAGCCAAGAAG
genomic: ATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAACCAGAGgtaatacctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGATCCTGAAGCCAAGAAG
EST: gi|213615216|gb|DB965024.1|DB965024
EST:     ATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGATCCTGAAGCCAAGAAGCCT
genomic: ATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAACCAGAGgtaatacctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGATCCTGAAGCCAAGAAGCCT
EST: gi|193404716|gb|FK369601.1|FK369601
EST:     ATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCC
genomic: ATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAACCAGAGgtaatacctt ... gtatttgtagGGGTATGATGACATCCC
EST: gi|24136456|gb|BU926966.1|BU926966
EST:     ATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAACCAGAG                         GGTTATGATGACATCCCAAAAGAGCTCCCAGATCCTGAAGCCAAGAAG
genomic: ATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAACCAGAGgtaatacctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGATCCTGAAGCCAAGAAG
EST: gi|6718756|gb|AW306403.1|AW306403
EST:     ATTGNGATGACAAAGAATNTATTCCTGATCCCGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCATAAGAGCTCCCAGATCCTGAAGCCAAGAAG
genomic: ATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAACCAGAGgtaatacctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGATCCTGAAGCCAAGAAG
EST: gi|207707986|gb|GD689865.1|GD689865
EST:     ATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGATCCTGAAGCCAAGAAG
genomic: ATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAACCAGAGgtaatacctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGATCCTGAAGCCAAGAAG
EST: gi|18692767|gb|BM521615.1|BM521615
EST:     ATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGA
genomic: ATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAACCAGAGgtaatacctt ... gtatttgtagGGGTATGATGACATCCCAAAAGA
EST: gi|26045988|gb|CA783372.1|CA783372
EST:     ATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGATCCTGAAGCCAAGAAG
genomic: ATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAACCAGAGgtaatacctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGATCCTGAAGCCAAGAAG
EST: gi|208268672|gb|GE072089.1|GE072089
EST:     ATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGATCCTGAAGCCAAGAAG
genomic: ATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAACCAGAGgtaatacctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGATCCTGAAGCCAAGAAG
EST: gi|22524331|gb|BU083142.1|BU083142
EST:     ATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGATCCTGAAGCCAAGAAG
genomic: ATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAACCAGAGgtaatacctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGATCCTGAAGCCAAGAAG
EST: gi|14990999|gb|BI316672.1|BI316672
EST:     ATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGATCCTGAAGCCAAGAAG
genomic: ATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAACCAGAGgtaatacctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGATCCTGAAGCCAAGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactttgcaagggtactatgtggtatatactgacttgcttgtcctgtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGATCCTGAAGCCAAGAAG
                           tactgac  putative branch site (score: 1)
                       tatatact  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaataccttttctaaaaggcctctcatgttatatgaactttgcaagggtactatgtggtatatactgacttgcttgtcctgtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGATCCTGAAGCCAAGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG