1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cccaacaggaaggatctctcttcgtactcaaaatgaatataccatttcctctttaatggagaaacttgcaatggctaaaacatattggttgccttttcagATGCCAAGAAGCAGATTCAACAATTTGCCTCTCAGACAATTGCCTCTCGGTTCTCATCTACCTTACAGTCAGCGTTCAGTGTTGTCTGA
species | Glycine max |
transcript | GLYMA20G22720.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCTGACCCTTAGCATTGCAAATATTGTTGGTTTTACCAAATGCAAAANAG ATGCCAAGAAGCAGATTCAACAATTTGCCTCTCAGACAATTGCCTCTCGGTEST: gi|23057344|gb|BU578018.1|BU578018
genomic: TCTGACCCTTAGCATTGCAAATATTGTTGGTTTTACCAAATGCAAAAAAGgtcagtaagt ... gccttttcagATGCCAAGAAGCAGATTCAACAATTTGCCTCTCAGACAATTGCCTCTCGGT
EST: TCTGACCCTTAGCATTGCAAATATTGTTGGTTTTACCAAATGCAAAAAAG ATGCCAAGAAGCAGATTCAACAATTTGCCTCTCAGA
genomic: TCTGACCCTTAGCATTGCAAATATTGTTGGTTTTACCAAATGCAAAAAAGgtcagtaagt ... gccttttcagATGCCAAGAAGCAGATTCAACAATTTGCCTCTCAGA
ttcctctttaatggagaaacttgcaatggctaaaacatattggttgccttttcagATGCCAAGAAGCAGATTCAACAATTTGCCTCTCAGACAATTGCCTCTCGGTTCTCATCTACCTTACAGTCAGCGTTCAGTGTTGTCTGA
ggctaaa putative branch site (score: 3)
ttgccttttc putative PPT
taaaacatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cccaacaggaaggatctctcttcgtactcaaaatgaatataccatttcctctttaatggagaaacttgcaatggctaaaacatattggttgccttttcagATGCCAAGAAGCAGATTCAACAATTTGCCTCTCAGACAATTGCCTCTCGGTTCTCATCTACCTTACAGTCAGCGTTCAGTGTTGTCTGA
cccaaca
- - - - - - - - - - - - -actcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaacata