1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gggtgttgtttatgagatggatgtgttttcttgctttattttgaagtaaagaacaaatttgattagtttaaatggctacatcatgagtcattgtgtccagGTGATCTGGAGCTTTTGGAGGAGCTTCAGTGGTTATGGTGTTTGATCGTGGTGGGTGGCACGGTCCTGTTAGGAAAGAGTTATTTGCATTTTTTTTCTTT
species | Glycine max |
transcript | GLYMA20G21510.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCATCATGTGCCATATGTACTAAAGAGCATACTACTACTTTGGTGGATGG GTGATCTGGAGCTTTTGGAGGAGCTTCAGTGGTTATGGTGTTTGATCGTGG
genomic: TCATCATGTGCCATATGTACTAAAGAGCATACTACTACTTTGGTGGATGGgttagtttta ... ttgtgtccagGTGATCTGGAGCTTTTGGAGGAGCTTCAGTGGTTATGGTGTTTGATCGTGG
gtaaagaacaaatttgattagtttaaatggctacatcatgagtcattgtgtccagGTGATCTGGAGCTTTTGGAGGAGCTTCAGTGGTTATGGTGTTTGATCGTGGTGGGTGGCACGGTCCTGTTAGGAAAGAGTTATTTGCATTTTTTTTCTTT
atttgat putative branch site (score: 5)
aacaaatttgattagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggtgttgtttatgagatggatgtgttttcttgctttattttgaagtaaagaacaaatttgattagtttaaatggctacatcatgagtcattgtgtccagGTGATCTGGAGCTTTTGGAGGAGCTTCAGTGGTTATGGTGTTTGATCGTGGTGGGTGGCACGGTCCTGTTAGGAAAGAGTTATTTGCATTTTTTTTCTTT
gggtgtt
- - - - - - - - - ggatgtg
- - - - - - - - - - - - - -ttcttgc
- - - - - - - - - - - - - - - - - - - - - - - - aagaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggctac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgag