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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagattcccttaatcggatactgttgttcaacttgccttagtctaaaaattaaaatacaaaaaaattcccgatcacttttaccttttcaattatttgatggcataattccttgatgttatattccttccattttttgtacttgcagATAATTGTGAAAGAAGATGATGATATGGTTGATTCCTCAGATATCTTTGCACATATCAGCGGAGTGAACTCTTTCAAATGCAACTATTCCATCCAGTCCT

Basic information

species Glycine max
transcript GLYMA20G21380.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G21380.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv05s0049g01830.t01 (Vitis vinifera), 3'ss of exon 4
gtaagattcccttaatcggatactgttgttcaacttgccttagtctaaaaattaaaatacaaaaaaattcccgatcacttttaccttt-tcaattatttgatg--gcat--aattccttgatgttatattccttccattttttgtacttgcagATAATTGTGAAAGAAGATGATGATATGGTTGATTCCTCAGATATCTTTGCACATATCAGCGGAGTGAACTCTTTCAAATGCAACTATTCCATCCAGTCCT
                                                                 ||   | |||  || |||||| | | |  || |  |||  ||||  |   | || || |  | | ||||   | ||||   |   |||||   | |||||||||| |||||  |||||||||||||||||||| | ||||||||||| || |||||||| ||||||||||  | | ||||||| ||||
---------------------------------------------------------------gtaagatctgat--ctattacctgtatgagatactaaatgtggcatgcagcccattaatttcttttcccttttgtatttt-cccaaacagATGGGTATGAAAGAAGAAGATGAACTGGTTGATTCCTCAGATATCCTGGCACATATCAGTGGTGTGAACTCCTTCAAATGCACTTTTCCCATCCAATCCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttgatggcataattccttgatgttatattccttccattttttgtacttgcagATAATTGTGAAAGAAGATGATGATATGGTTGATTCCTCAGATATCTTTGCACATATCAGCGGAGTGAACTCTTTCAAATGCAACTATTCCATCCAGTCCT
                 ccttgat  putative branch site (score: 5)
                              ttccttccattttttg  putative PPT
                      atgttatatt  TA-rich tract