Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttattttgcttctattcttcatacattcttgatactatttatcatttttgggttgttgattcattttgttttacgatgaagagatgatgctaattgttattttgttgctgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGGAAACAGGGTCCTAAAACTCCCCTCCCTGATCTTGTCACAATCCATTCTC

Basic information

species Glycine max
transcript GLYMA20G21190.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G21190.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os07g41750.1 (Oryza sativa), 3'ss of exon 5
gttattttgcttctattcttcatacattcttgatactatttatcatttttgggttgttgattcattttgttttacgatgaagagatgatgctaattgttattttgttgctgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGGAAACAGGGTCCTAAAACTCCCCTCCCTGATCTTGTCACAATCCATTCTC
                          || |  |||  ||  |||   ||||  |      ||  | |    ||  |||     ||   |  |  ||   |  |  ||  ||  |   ||||||| || || |||||||| ||||| ||||||||||||||||| ||||| || || || || |  |||||  | || |||||||| || |||||| | |
------------------------gtttgtacataaaatccatc-cgtttgaataaaatgttgctgtctccttgtgatagcttgaatttttttcttagaagctgcttcttgtttt-cagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGCAAGCAAGGACCAATGACTCCTTTACCGGATCTTGTTACCATCCATGCCC

upper sequence: GLYMA20G21190.1 (Glycine max), 3'ss of exon 5
lower sequence: AT5G35530.1 (Arabidopsis thaliana), 3'ss of exon 5
gttattttgcttctattcttcatacattcttgatactatttatcatttttgggttgttgattcattttgttttacgatgaagagatgatgc-taattgttattttgttgctgcctcat--agGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGGAAACAGGGTCCTAAAACTCCCCTCCCTGATCTTGTCACAATCCATTCTC
                      |   ||||| | | |    | |  |||       |||| |||     || |||  |   |||||  ||  |||     || | |||  |  |   |  ||||||| |||||  | |||||||||||||||||||| ||||| || ||||| ||||| || || |  || ||  | |||||| |||| |  |||||| | |
---------------------gtcagttcttcacagtggaaacctgtttc------ttgaatcac---attctacc-tagtgagatcttgtgtaacctgaatctggttaatcacatgtgcagGGTGTGCTTGGTCTCAAGGTGAAGATCATGCTTGACTGGGACCCCAAGGGCAAACAAGGACCGATGACACCATTGCCTGATGTTGTGATCATCCATACAC

upper sequence: GLYMA20G21190.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv11s0016g01380.t01 (Vitis vinifera), 3'ss of exon 5
-gttattttgcttctattcttcatacattcttgatactatttat---catttttgg--gttgt--tgattcattttgtt--ttacgatgaa-gagatgatg--ctaattgttattttg-----ttgctgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGGAAACAGGGTCCTAAAACTCCCCTCCCTGATCTTGTCACAATCCATTCTC
  ||  ||  ||       || ||   ||| || | || ||| |   |||  |      |||   || |||||   |||  ||||  | |  |  ||  ||  || ||  |  | | |     ||||   |  | ||||||| ||||| || ||||| ||||||||||||||||||||||| ||||| || || || || ||||| || ||||||||||||||||| |||||  |||
gtttgcttcactcacccagttgatctgttcatgcttctttttgttaacatcctcaaccattgcggtggttcatacggttgcttaccttcattgcaattgtgtcctgatcatgttctggattgcttgccatcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGAAAGCAAGGCCCCAAAACGCCTCTCCCTGATCTTGTCACCATCCACACTC

upper sequence: GLYMA20G21190.1 (Glycine max), 3'ss of exon 5
lower sequence: PP1S127_74V6.1 (Physcomitrella patens), 3'ss of exon 5
--------gttattttgcttctattcttcatacattcttgatactatttatcatttttgggttgttgattcattttgttttacgatgaagagatgatgctaattgttattttgttgctgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGGAAACAGGGTCCTAAAACTCCCCTCCCTGATCTTGTCACAATCCATTCTC
        | |  ||    ||  |   |    | || ||  |||||      |  | | | ||| |  |   | ||      ||| |   |  ||| |   |   ||| |||| |      | | |||| || || ||||||||||||||||||||||| || |||||||| |||||||| || || || |  ||||| || || ||| | || || || ||    |
gtacacaagatgcttgatgtccgtcagtagctcctttttcgtacta---gaaagatattgattgatagtcggtgttcc----cgaagtgaatctgaagtggaggattactttggtatg--tttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGGAAGCAAGGACCCATGACTCCACTTCCCGATGTAGTGACTATTCACATGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213611139|gb|DB983918.1|DB983918
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|15000177|gb|BI320991.1|BI320991
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|20498169|gb|BQ273099.1|BQ273099
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|58018699|gb|CX705441.1|CX705441
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|151394186|gb|EV264057.1|EV264057
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|21678027|gb|BQ630378.1|BQ630378
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAAGTGAAGATCATGCTT
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTT
EST: gi|24205643|gb|BU964896.1|BU964896
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAA
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAA
EST: gi|14991787|gb|BI317460.1|BI317460
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|192316858|gb|FK006085.1|FK006085
EST:     CAGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|17023989|gb|BM095023.1|BM095023
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|254316297|gb|GR827834.1|GR827834
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|58014813|gb|CX701555.1|CX701555
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|22541845|gb|BU091688.1|BU091688
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGG
EST: gi|298189761|gb|HO038164.1|HO038164
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|192325123|gb|FK019069.1|FK019069
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|37996532|gb|CF808121.1|CF808121
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|7041963|gb|AW471857.1|AW471857
EST:     CTGTCAAAGATTACATTGGCTCTGCAGGGAGACATGTGCTCCTGAGACAA                         GGTGTTTTTGGCATTAAAGTGAAGAT
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGAT
EST: gi|192324902|gb|FK015383.1|FK015383
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|209701755|gb|BW655896.1|BW655896
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|58024786|gb|CX711527.1|CX711527
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|31307494|gb|CD392697.1|CD392697
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|7925503|gb|AW831529.1|AW831529
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTTGCATTATAG-TGAAGATCAT
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTA-AGGTGAAGATCAT
EST: gi|26268284|gb|CA819347.1|CA819347
EST:     GTCAGAGATTTAC-TTGACTCTGCAGTGAGACATGGGCTCCCTAA-ACCG                         GGGGTTCTTGGGATTAAG
genomic: GTCAAAGATT-ACATTGACTCTGCAGTGAGACATGTGCTCC-TGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAG
EST: gi|57576092|gb|CX549063.1|CX549063
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|192326793|gb|FK017360.1|FK017360
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTACTCCTGAGACAG                         GGTGTTCTTGGCATTAAAGTGAAGATCATGCTTGATTGGGATCCTAAAGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAA-GGG
EST: gi|13790896|gb|BG653487.1|BG653487
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|9986821|gb|BE660929.1|BE660929
EST:     TGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAAG                         GGTGTTCTTGGCATTAANGTGAAGATCATGCCTTGAATGGGATCCTAAGG
genomic: TGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACA-Ggttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGC-TTGATTGGGATCCTAAGG
EST: gi|6094998|gb|AW119665.1|AW119665
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|209701714|gb|BW655895.1|BW655895
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|209721034|gb|BW666291.1|BW666291
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|7924389|gb|AW830415.1|AW830415
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|192316859|gb|FK006086.1|FK006086
EST:     CAGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAAGTGAAGATCATGCTTGATTGGGATCCTAAAGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|22524443|gb|BU083254.1|BU083254
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|18040077|gb|BM308371.1|BM308371
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATC
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATC
EST: gi|192303477|gb|FG994483.1|FG994483
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATT
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATT
EST: gi|4292317|gb|AI437745.1|AI437745
EST:     TGTCAAAGATTACATTGACTCTGCAGTGAGACATGTNGCTC-TGAGACAG                         GGTGT-CTTTGCATTA
genomic: TGTCAAAGATTACATTGACTCTGCAGTGAGACATGT-GCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTA
EST: gi|15664562|gb|BI701933.1|BI701933
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAANGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|31472070|gb|CD414098.1|CD414098
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|23727936|gb|BU762008.1|BU762008
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|254316296|gb|GR827833.1|GR827833
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|192315548|gb|FK009700.1|FK009700
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCT
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCT
EST: gi|31306391|gb|CD391594.1|CD391594
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|9820315|gb|BE555825.1|BE555825
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTTCTGAGACAG                         G-TGTTCTTGGCATT
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATT
EST: gi|192303478|gb|FG994484.1|FG994484
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|192315549|gb|FK009701.1|FK009701
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
EST: gi|209721033|gb|BW666290.1|BW666290
EST:     CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAG                         GGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG
genomic: CTGTCAAAGATTACATTGACTCTGCAGTGAGACATGTGCTCCTGAGACAGgttattttgc ... tgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgttttacgatgaagagatgatgctaattgttattttgttgctgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGGAAACAGGGTCCTAAAACTCCCCTCCCTGATCTTGTCACAATCCATTCTC
                        tgctaat  putative branch site (score: 2)
                                            ctgcctc  putative PPT
                           taattgttattttgtt  TA-rich tract