1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gctctatctgtagttaggtatattttttagtttccaatttcgcatacccttcaattatattcccttcttttgatggtttgttatattcaataactaatagGAACGGTTGGAAGCCAAAAACTTGTTTGCTTCAAAAGAAGTTATAGAAGAGATTCAAAGGACACCAGCAAAAACATTTTCAACTGGTGAAACTCCAAATG
species | Glycine max |
transcript | GLYMA20G18440.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAGAAAGTGAAAAATAAG GAACGGTTGGAAGCCAAAAACTTGTTTGCTTCAAAAGAAGTTATAGAAGAGEST: gi|192294286|gb|FG986375.1|FG986375
genomic: AAGAAAGTGAAAAATAAGgtaattcccc ... taactaatagGAACGGTTGGAAGCCAAAAACTTGTTTGCTTCAAAAGAAGTTATAGAAGAG
EST: ACAACCTGAAATCCCTCCGGGTGTTAGATTTCAAGAAAGTGAAAAATAAG GAACGGTTGGAAGCCAAAAACTTGTTTGCTTCAAAAGAAGTTATAGAAGAGEST: gi|192326367|gb|FK017669.1|FK017669
genomic: ACAACCTGAAATCCCTCCGGGTGTTAGATTTCAAGAAAGTGAAAAATAAGgtaattcccc ... taactaatagGAACGGTTGGAAGCCAAAAACTTGTTTGCTTCAAAAGAAGTTATAGAAGAG
EST: ACAACCTGAAATCCCTCCGGGTGTTAGATTTCAAGAAAGTGAAAAATAAG GAACGGTTGGAAGCCAAAAACTTGTTTGCTTCAAAAGAAGTTATAGAAGAGEST: gi|192305355|gb|FG994037.1|FG994037
genomic: ACAACCTGAAATCCCTCCGGGTGTTAGATTTCAAGAAAGTGAAAAATAAGgtaattcccc ... taactaatagGAACGGTTGGAAGCCAAAAACTTGTTTGCTTCAAAAGAAGTTATAGAAGAG
EST: ATTTCAAGAAAGTGAAAAATAAG GAACGGTTGGAAGCCAAAAACTTGTTTGCTTCAAAAGAAGTTATAGAAGAGEST: gi|193607032|gb|FK560025.1|FK560025
genomic: ATTTCAAGAAAGTGAAAAATAAGgtaattcccc ... taactaatagGAACGGTTGGAAGCCAAAAACTTGTTTGCTTCAAAAGAAGTTATAGAAGAG
EST: ACAACCTGAAATCCCTCCGGGTGTTAGATTTCAAGAAAGTGAAAAATAAG GAACGGTTGGAAGCCAAAAACTTGTTTGCTTCAAAAGAAGTTATAGAAGAGEST: gi|193674748|gb|FK620388.1|FK620388
genomic: ACAACCTGAAATCCCTCCGGGTGTTAGATTTCAAGAAAGTGAAAAATAAGgtaattcccc ... taactaatagGAACGGTTGGAAGCCAAAAACTTGTTTGCTTCAAAAGAAGTTATAGAAGAG
EST: ACAACCTGAAATCCCTCCGGGTGTTAGATTTCGAGAAAGTGAAAAATAAG GAACGGTTGGAAGCCAAAAACTTGTTTGCTTCAAAAGAAGTTATAGAAGAGEST: gi|120494048|gb|EH222215.1|EH222215
genomic: ACAACCTGAAATCCCTCCGGGTGTTAGATTTCAAGAAAGTGAAAAATAAGgtaattcccc ... taactaatagGAACGGTTGGAAGCCAAAAACTTGTTTGCTTCAAAAGAAGTTATAGAAGAG
EST: AGAAAGTGAAAAATAAG GAACGGTTGGAAGCCAAAAACTTGTTTGCTTCAAAAGAAGTTATAGAAGAGEST: gi|151394202|gb|EV264073.1|EV264073
genomic: AGAAAGTGAAAAATAAGgtaattcccc ... taactaatagGAACGGTTGGAAGCCAAAAACTTGTTTGCTTCAAAAGAAGTTATAGAAGAG
EST: ACAACCTGAAATCCCTCCGGGTGTTAGATTTCAAGAAAGTGAAAAATAAG GAACGGTTGGAAGCCAAAAACTTGTTTGCTTCAAAAGAAGTTATAGAAGAGEST: gi|16343914|gb|BI969509.1|BI969509
genomic: ACAACCTGAAATCCCTCCGGGTGTTAGATTTCAAGAAAGTGAAAAATAAGgtaattcccc ... taactaatagGAACGGTTGGAAGCCAAAAACTTGTTTGCTTCAAAAGAAGTTATAGAAGAG
EST: TGTTAGATTTCAAGNNNGTGAAAAATAAG GAACGGTTGGAAGCCAAANACTTGTTTGCTTCAAAAGAAGTTATAGAAGAG
genomic: TGTTAGATTTCAAGAAAGTGAAAAATAAGgtaattcccc ... taactaatagGAACGGTTGGAAGCCAAAAACTTGTTTGCTTCAAAAGAAGTTATAGAAGAG
acccttcaattatattcccttcttttgatggtttgttatattcaataactaatagGAACGGTTGGAAGCCAAAAACTTGTTTGCTTCAAAAGAAGTTATAGAAGAGATTCAAAGGACACCAGCAAAAACATTTTCAACTGGTGAAACTCCAAATG
caataac putative branch site (score: 2)
tttgttatattcaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctctatctgtagttaggtatattttttagtttccaatttcgcatacccttcaattatattcccttcttttgatggtttgttatattcaataactaatagGAACGGTTGGAAGCCAAAAACTTGTTTGCTTCAAAAGAAGTTATAGAAGAGATTCAAAGGACACCAGCAAAAACATTTTCAACTGGTGAAACTCCAAATG
- -ctatctg
- - - - - - - - - - - - - - - - - - - - - cataccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatggtt