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gtttttgcagcactgtgactctatgtcctttttgatacagtagataagaattatgatgtttcattgtttctatcattgtttttttcatttagaaatttgactctgtagataacaacagGAGGTGGACATTGAGAGTTGCCACCAGTCAAATACTGGGAGCCATTCTCCAAGCATGATACATCCTAAAGAAACTAGTGAATACTGTGGAAGTCCTATTG
species | Glycine max |
transcript | GLYMA20G16030.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG AEST: gi|192328272|gb|FK020477.1|FK020477
genomic: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacag-
EST: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG AEST: gi|192328272|gb|FK020477.1|FK020477
genomic: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacag-
EST: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG AEST: gi|192328272|gb|FK020477.1|FK020477
genomic: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacag-
EST: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG AEST: gi|192328272|gb|FK020477.1|FK020477
genomic: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacag-
EST: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG AEST: gi|192328272|gb|FK020477.1|FK020477
genomic: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacag-
EST: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG AEST: gi|192328272|gb|FK020477.1|FK020477
genomic: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacag-
EST: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG AEST: gi|192328272|gb|FK020477.1|FK020477
genomic: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacag-
EST: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG AEST: gi|192328272|gb|FK020477.1|FK020477
genomic: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacag-
EST: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG AEST: gi|192328272|gb|FK020477.1|FK020477
genomic: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacag-
EST: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG AEST: gi|120532986|gb|EH261119.1|EH261119
genomic: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacag-
EST: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG AEST: gi|120532986|gb|EH261119.1|EH261119
genomic: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacag-
EST: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG AEST: gi|120532986|gb|EH261119.1|EH261119
genomic: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacag-
EST: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG AEST: gi|120532986|gb|EH261119.1|EH261119
genomic: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacag-
EST: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG AEST: gi|120532986|gb|EH261119.1|EH261119
genomic: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacag-
EST: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG AEST: gi|120532986|gb|EH261119.1|EH261119
genomic: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacag-
EST: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG AEST: gi|120532986|gb|EH261119.1|EH261119
genomic: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacag-
EST: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG AEST: gi|120532986|gb|EH261119.1|EH261119
genomic: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacag-
EST: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG AEST: gi|120532986|gb|EH261119.1|EH261119
genomic: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacag-
EST: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG AEST: gi|120532986|gb|EH261119.1|EH261119
genomic: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacag-
EST: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG AEST: gi|120493251|gb|EH221418.1|EH221418
genomic: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacag-
EST: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG GAGGTGGACATTGAGAGTTGCCACCAGTCAAATACTGGGAGCCATTCTCCAEST: gi|12691307|gb|BG157643.1|BG157643
genomic: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacagGAGGTGGACATTGAGAGTTGCCACCAGTCAAATACTGGGAGCCATTCTCCA
EST: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG GAGGTGGACATTGAGAGTTGCCACCAGTCAAATACTGGGAGCCATTCTCCAEST: gi|7146905|gb|AW508827.1|AW508827
genomic: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacagGAGGTGGACATTGAGAGTTGCCACCAGTCAAATACTGGGAGCCATTCTCCA
EST: GCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG GAGGTGGACATTGAGAGTTGCCACCAGTCAAATACTGGGAGCCATTCTCCAEST: gi|9204212|gb|BE330436.1|BE330436
genomic: GCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacagGAGGTGGACATTGAGAGTTGCCACCAGTCAAATACTGGGAGCCATTCTCCA
EST: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG GAGGTGGACATTGAGAGTTGCCACCAGTCAAATACTGGGAGCCATTCTCCA
genomic: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacagGAGGTGGACATTGAGAGTTGCCACCAGTCAAATACTGGGAGCCATTCTCCA
ttgtttctatcattgtttttttcatttagaaatttgactctgtagataacaacagGAGGTGGACATTGAGAGTTGCCACCAGTCAAATACTGGGAGCCATTCTCCAAGCATGATACATCCTAAAGAAACTAGTGAATACTGTGGAAGTCCTATTG
agataac putative branch site (score: 3)
tatcattgtttttttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttttgcagcactgtgactctatgtcctttttgatacagtagataagaattatgatgtttcattgtttctatcattgtttttttcatttagaaatttgactctgtagataacaacagGAGGTGGACATTGAGAGTTGCCACCAGTCAAATACTGGGAGCCATTCTCCAAGCATGATACATCCTAAAGAAACTAGTGAATACTGTGGAAGTCCTATTG
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