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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtttatatgtgaatgggaattgcatctttacttgaggaggtaatatttaagttaatgataagcatcattggaatgttgcagCCACCTTGGGACTTTGATGTTGAGAACAATTTTATAATCCATTATACTTATGCATGTGACTACAATTTAAAG

Basic information

species Glycine max
transcript GLYMA20G08020.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G08020.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv06s0009g03360.t01 (Vitis vinifera), 3'ss of exon 5
----------------gtttgtttatatgtgaatgggaattgcatctttac-ttgaggaggtaatatttaagttaatgataagcatcattggaatgttgcagCCACCTTGGGACTTTGATGTTGAGAACAATTTTATAATCCATTATACTTATGCATGTGACTACAATTTAAAG
                 |   |  || ||   ||    ||| | |||| |  || |     ||  |  |   | | | | | ||||| ||| ||  || ||||| || ||||| || || |||| ||| || ||||| ||||||||||| |||| ||||||||||||||| |||
gtttgcatgtgtcctgatgactcaatctgcatatcaccatttcttcttaatgtttatagaatatcacatggatcactaacatgcatc-ttgtaagttttcagCCTCCATGGGATTTGGAAGTTGGGAAGAAGTTTATTATCCATTATACATATGGATGTGACTACAATTTGAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttacttgaggaggtaatatttaagttaatgataagcatcattggaatgttgcagCCACCTTGGGACTTTGATGTTGAGAACAATTTTATAATCCATTATACTTATGCATGTGACTACAATTTAAAG
                       agttaat  putative branch site (score: 4)
              taatatttaagttaat  TA-rich tract