1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tttagggaaaaacaaattcccacaaaagccagaccaatccaaatgaatgaagaacttcttcaatactatcaaaaggaaatcaaggatttgcttgataaagGCCTAATCCGGAAAAACAAAAGCCCATGGTCTTGTGCGGCTTTTTATGTCAACAAACAATCTGAAATTGAGCATGGAACACCCCGCTTAGTCATAAATTA
species | Glycine max |
transcript | GLYMA20G06230.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
aatgaagaacttcttcaatactatcaaaaggaaatcaaggatttgcttgataaagGCCTAATCCGGAAAAACAAAAGCCCATGGTCTTGTGCGGCTTTTTATGTCAACAAACAATCTGAAATTGAGCATGGAACACCCCGCTTAGTCATAAATTA
gcttgat putative branch site (score: 5)
tttgctt CT-rich tract
aatactat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttagggaaaaacaaattcccacaaaagccagaccaatccaaatgaatgaagaacttcttcaatactatcaaaaggaaatcaaggatttgcttgataaagGCCTAATCCGGAAAAACAAAAGCCCATGGTCTTGTGCGGCTTTTTATGTCAACAAACAATCTGAAATTGAGCATGGAACACCCCGCTTAGTCATAAATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - -aaacaaa
- - - - - - - - ttcccac
- - - - - - - - - - - - - - ccagacc
- - - - - - - - - - - - - - - - - - atccaaa
- - - - - - - - - - - - - - - - - - - - - -tgaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggatttg