1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtatgttttaaataacttttgtctcttttaatttttttttcaaaagcaaatcattatacagtatgaacaaagttttgcttcatatcagaattgtaaatgagggattttgtagGATTTTCGTCTAAAAGATCTTTCTGAGTATGAAGAATGGTATGGTCAGCCGCATAGAGCACCAGATTTACAG
species | Glycine max |
transcript | GLYMA20G01220.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAATTATTAAAGGCCTACCAAAGCACCTGAAGATTGTTGATCTTTCTGCA GATTTTCGTCTAAAAGATCTTTCTGAGTATGAAGAATGGTATGGTCAGCCGEST: gi|213618222|gb|DB972992.1|DB972992
genomic: AAATTATTAAAGGCCTACCAAAGCACCTGAAGATTGTTGATCTTTCTGCAgtatgtttta ... gattttgtagGATTTTCGTCTAAAAGATCTTTCTGAGTATGAAGAATGGTATGGTCAGCCG
EST: AAATTATTAAAGGCCTACCAAAGCACCTGAAGATTGTTGATCTTTCTGCA GATTTTCGTCTAAAAGATCTTTCTGAGTATGAAGAATGGTATGGTCAGCCGEST: gi|26045728|gb|CA783226.1|CA783226
genomic: AAATTATTAAAGGCCTACCAAAGCACCTGAAGATTGTTGATCTTTCTGCAgtatgtttta ... gattttgtagGATTTTCGTCTAAAAGATCTTTCTGAGTATGAAGAATGGTATGGTCAGCCG
EST: GTTGATCTTTCTGC- CTTTTTCGTCTAAAAGATCTTTCTGAGTATGAAGAATGGTATGGTCAGCCGEST: gi|193638135|gb|FK586629.1|FK586629
genomic: GTTGATCTTTCTGCAgtatgtttta ... gattttgtagGATTTTCGTCTAAAAGATCTTTCTGAGTATGAAGAATGGTATGGTCAGCCG
EST: AAATTATTAAAGGCCTACCAAAGCACCTGAAGATTGTTGATCTTTCTGCA GATTTTCGTCTAAAAGATCTTTCTGAGTATGAAGAATGGTATGGTCAGCCGEST: gi|192326752|gb|FK017349.1|FK017349
genomic: AAATTATTAAAGGCCTACCAAAGCACCTGAAGATTGTTGATCTTTCTGCAgtatgtttta ... gattttgtagGATTTTCGTCTAAAAGATCTTTCTGAGTATGAAGAATGGTATGGTCAGCCG
EST: AAATTATTAAAGGCCTATCAAAGCACCTGAAGATTGTTGATCTTTCTGCA GATTTTCGTCTAAAAGATCTTTCTGAGTATGAAGAATGGTATGGTCAGCCG
genomic: AAATTATTAAAGGCCTACCAAAGCACCTGAAGATTGTTGATCTTTCTGCAgtatgtttta ... gattttgtagGATTTTCGTCTAAAAGATCTTTCTGAGTATGAAGAATGGTATGGTCAGCCG
acagtatgaacaaagttttgcttcatatcagaattgtaaatgagggattttgtagGATTTTCGTCTAAAAGATCTTTCTGAGTATGAAGAATGGTATGGTCAGCCGCATAGAGCACCAGATTTACAG
aattgtaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttttaaataacttttgtctcttttaatttttttttcaaaagcaaatcattatacagtatgaacaaagttttgcttcatatcagaattgtaaatgagggattttgtagGATTTTCGTCTAAAAGATCTTTCTGAGTATGAAGAATGGTATGGTCAGCCGCATAGAGCACCAGATTTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA