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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgaattaatttattgctttcttagccaatgaaaccaaccatttccacaataacaaatacaaatataatgtggtattgacatttggctcaacacagGGAGAGAAAGATGATAAAATCATTGCAGTGTGTGCTGATGACCCAGAATATAAGCACTTTACTGACTATAGAGAACTTGCACCTCATCGCATCTCCGAGA

Basic information

species Glycine max
transcript GLYMA19G45050.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G45050.1 (Glycine max), 3'ss of exon 5
lower sequence: AT1G01050.1 (Arabidopsis thaliana), 3'ss of exon 6
---------gtactgaattaattta------ttgctttcttagccaatgaaaccaaccatttccacaataacaaatacaaatataatgtggtattg-acatttggctcaaca----cagGGAGAGAAAGATGATAAAATCATTGCAGTGTGTGCTGATGACCCAGAATATAAGCACTTTACTGACTATAGAGAACTTGCACCTCATCGCATCTCCGAGA
           |||  || |||  |       || ||| ||   |  | |  | || | |||     |    ||||     | || |    | ||| |  |||||| |   |     |||| || |||||||| || |||||||||||||||| |||||| || |||||||||||||  ||||||   | ||||||| | ||||| ||  |||| || |
gtaaaacctaaacttgatcaatgaaaagactctgttttttttttctcttactctaatcctttaggtcagtttaaatggtcttgtactccaatcttgtatttttggcgctgtaattttagGGTGAAAAAGATGACAAGATCATTGCAGTGTGTGTTGATGATCCTGAATATAAGCACTACACTGACATCAAAGAACTTCCTCCTCACCGTCTCTCTGAAA

upper sequence: GLYMA19G45050.1 (Glycine max), 3'ss of exon 5
lower sequence: AT2G46860.1 (Arabidopsis thaliana), 3'ss of exon 5
-----------------------------------------------------gtactgaatta-atttattgctttcttagccaatgaaaccaaccatttccacaataaca--aatacaaatat--aatgtggtattgacatttggctcaacacagGGAGAGAAAGATGATAAAATCATTGCAGTGTGTGCTGATGACCCAGAATATAAGCACTTTACTGACTATAGAGAACTTGCACCTCATCGCATCTCCGAGA
                                                      || || || | | | ||     |   |  | | |||| | |  |||| || |  | |    ||     ||   ||| |||  ||| |  |   |      |||||||||||||| || |||||||| || || ||||||||||| ||||| || || || || || |||   | | |||| || ||||||||  ||   || |
gtttgcatagatctttcttagagatcatctaaaagtgcaagctctagaaattgatattgcataagaatcatcaaacttgcaatccaagaaatccaaaatttacatatgagctttgatcttggtactaaatatggctttgccggtgaacgt--ttcagGGAGAGAAAGACGACAAAATCATAGCCGTATGTGCTGATGATCCAGAGTACAAACATTTCACAGACATCAAACAACTCGCTCCTCATCGTCTCCAAGAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttccacaataacaaatacaaatataatgtggtattgacatttggctcaacacagGGAGAGAAAGATGATAAAATCATTGCAGTGTGTGCTGATGACCCAGAATATAAGCACTTTACTGACTATAGAGAACTTGCACCTCATCGCATCTCCGAGA
                                tattgac  putative branch site (score: 2)
     acaataacaaatacaa  TA-rich tract