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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tacattataagcgcacagaaattccttttcatttttgacaaaaaaaaaaaaacaaaaatgagtaaggttgtgaatgagttccttttctatatgcctgcagGAAATTCTGAGAAAAAGGTGACTCCAATGGAAGAAATGAAATCTCTAGATTTGAAAAC

Basic information

species Glycine max
transcript GLYMA19G43690.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151401612|gb|EV269865.1|EV269865
EST:     AAGTATAGAACTGCCAGATATAAACCAGAGCCGTCAGAAG                         GAAATTCTGAGAAAAAGGTGACTCCAATGGAAGAAATGAAATCTCTAGATT
genomic: AAGTATAGAACTGCCAGATATAAACCAGAGCCGTCAGAAGgtatgtagag ... atgcctgcagGAAATTCTGAGAAAAAGGTGACTCCAATGGAAGAAATGAAATCTCTAGATT
EST: gi|192303317|gb|FG997403.1|FG997403
EST:     AAGTATAGAACTGCCAGATATAAACCAGAGCCGTCAGAAG                         GAAATTTTGAGAAAAAGGTGACTCCAATGGAAGAAATGAAATCTCTAGATT
genomic: AAGTATAGAACTGCCAGATATAAACCAGAGCCGTCAGAAGgtatgtagag ... atgcctgcagGAAATTCTGAGAAAAAGGTGACTCCAATGGAAGAAATGAAATCTCTAGATT
EST: gi|254338680|gb|GR849991.1|GR849991
EST:     CCAGAATATAAACCAGAGCCGTCAGAAGG                         GAAATTCTGAGAAAAAGGTGACTCCAATGGAAGAAATGAAATCTCTAGAT
genomic: CCAG-ATATAAACCAGAGCCGTCAGAA-Ggtatgtagag ... atgcctgcagGAAATTCTGAGAAAAAGGTGACTCCAATGGAAGAAATGAAATCTCTAGAT
EST: gi|192303316|gb|FG997402.1|FG997402
EST:     AAGTATAGAACTGCCAGATATAAACCAGAGCCGTCAGAAG                         GAAATTCTGAGAAAAAGGTGACTCCAATGGAAGAAATGAAATCTCTAGATT
genomic: AAGTATAGAACTGCCAGATATAAACCAGAGCCGTCAGAAGgtatgtagag ... atgcctgcagGAAATTCTGAGAAAAAGGTGACTCCAATGGAAGAAATGAAATCTCTAGATT
EST: gi|15200128|gb|BI424187.1|BI424187
EST:     AAGTATAGAACTGCCAGATATAAACCAGAGCCGTCAGAAG                         GAAATTCTGAGAAAAAGGTGACTCCAATGGAAGAAATGAAATCTCTAGATT
genomic: AAGTATAGAACTGCCAGATATAAACCAGAGCCGTCAGAAGgtatgtagag ... atgcctgcagGAAATTCTGAGAAAAAGGTGACTCCAATGGAAGAAATGAAATCTCTAGATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaaaacaaaaatgagtaaggttgtgaatgagttccttttctatatgcctgcagGAAATTCTGAGAAAAAGGTGACTCCAATGGAAGAAATGAAATCTCTAGATTTGAAAAC
                                 ttccttttctatat  CT-rich tract
                                     ttttctatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tacattataagcgcacagaaattccttttcatttttgacaaaaaaaaaaaaacaaaaatgagtaaggttgtgaatgagttccttttctatatgcctgcagGAAATTCTGAGAAAAAGGTGACTCCAATGGAAGAAATGAAATCTCTAGATTTGAAAAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA