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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagattgctttctttctcttttctattgaagaagtgtttttttcaggagtggcaagatatcaatcgcattttacatttccagGGGAAGAAACCGGATGCCTTGTATAAAGTGAAGGATCCAGAAGTGCGAAAATTTGTTGAGAAATGCCTGGCAACAGTGTCTCTAAGGCTCTCTGCAAGGG

Basic information

species Glycine max
transcript GLYMA19G43210.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G43210.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv14s0030g01660.t01 (Vitis vinifera), 3'ss of exon 5
--------gtaagattgctttctttctcttttctattgaagaagtgtttttttcaggagtggcaagatatcaatcgcattttacatttccagGGGAAGAAACCGGATGCCTTGTATAAAGTGAAGGATCCAGAAGTGCGAAAATTTGTTGAGAAATGCCTGGCAACAGTGTCTCTAAGGCTCTCTGCAAGGG
          |       | |||||||||  |    |  |   || |  |||       || |   | ||  | |     ||     |  ||||||| ||||| ||||| || ||||||||||||||||| ||||||||| ||||||||||||||||| ||||  | |||||||| |||||||| || || |
gttagtactcactccctatatctttctctcgttctctccatttgtttgctttgtctctatgtctccacattga-catgccttgttgctttagGGGAAAAAACCAGATGCTTTATATAAAGTGAAGGATCCGGAAGTGCGAGAATTTGTTGAGAAATGCTTGGCTTCTGTGTCTCTGAGGCTCTCCGCTAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120534339|gb|EH262472.1|EH262472
EST:     CTTATAGCGAATGTAGCCATCCAGCACAAATCTACAAGAAAGTTATTTCT                         GGGAAGAAACCGGATGCCTTGTATAAAGTGAAGGATCCAGAAGTGCGAAAA
genomic: CTTATAGCGAATGTAGCCATCCAGCACAAATCTACAAGAAAGTTATTTCTgtaagattgc ... acatttccagGGGAAGAAACCGGATGCCTTGTATAAAGTGAAGGATCCAGAAGTGCGAAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaagaagtgtttttttcaggagtggcaagatatcaatcgcattttacatttccagGGGAAGAAACCGGATGCCTTGTATAAAGTGAAGGATCCAGAAGTGCGAAAATTTGTTGAGAAATGCCTGGCAACAGTGTCTCTAAGGCTCTCTGCAAGGG
                                              catttcc  CT-rich tract
                                        attttacattt  TA-rich tract