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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgtactccaaacatcttatgcttcttattaagtgtatcgagaaaaagttcattttattgtttctatatgctccacattgaaacagatagctactttggttgaattatcaatttcaaatccattctttgatcctttaatagtgtcttgctttttagAACAATACTGTTGCCTCTGGTGGCCTTGGTGGGGAGGTTTTTATATGGGATATCGAGGCTGCCCTTGCTCCCTCTAAGTGTAATGATGCTATGGTTGATG

Basic information

species Glycine max
transcript GLYMA19G43070.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G43070.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os12g06810.2 (Oryza sativa), 3'ss of exon 5
gtaatgtactccaaacatcttatgcttcttattaagtgtatcgagaaaaagttcattttattgtttctatatgctccacattgaaacagatagctactttggttgaattatcaatttcaaatccattctttgat---cctttaatagtgtcttgctttttagAACAATACTGTTGCCTCTGGTGGCCTTGGTGGGGAGGTTTTTATATGGGATATCGAGGCTGCCCTTGCTCCCT---CTAAGTGTAATGATGCTATGGTTGATG
                                                                          |  |   |  | ||    |||  | || | ||| ||   |||| |   |  || ||| |      |||  |  |    |||  | |||| ||||| ||||||||||||||||||||| || ||||| |||||||||||  | ||  || | ||||||||     | || | |   ||||| |  |  |   
-------------------------------------------------------------------------gtatattatccagcactatgcttttctg-tggaactactcattttatcccttttgttttacatgtttttttttattctctgcaatgtagAGCAATATTGTTGCCTCTGGTGGCCTTGGCGGTGAGGTCTTTATATGGGACCTTGATTCTTCTCTTGCTCCTGTGGCCAAATCTGTAGATGCAAAAGAGG---

upper sequence: GLYMA19G43070.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G167999_T01 (Zea mays), 3'ss of exon 5
gtaatgtactccaaacatcttatgcttcttattaagtgtatcgagaaaaagttcattttattgtttctatatgctccacattgaaacagatagctactttggttgaattatcaatttcaaatccattctttgatcctttaatagtgtcttgctttttagAACAATACTGTTGCCTCTGGTGGCCTTGGTGGGGAGGTTTTTATATGGGATATCGAGGCTGCCCTTGCTCCCT---CTAAGTGTAATGATGCTATGGTTGATG
                                                                    ||||  |||||| |    |          ||  || | ||| | |   |    | |||| |||     |||  |      |||  || |||| ||||| ||| ||||||||||| |||||||| |||||||| || |||||  | || ||||| ||||||||     | || | |   ||||| |  |  |   
-----------------------------------------------------------------gtaatattatccacacttgtgct--------tttctgtggtatttttagcctt---ttcattttttacagtttttttgcc--tttgaattgtagAGCAATATTGTAGCCTCTGGTGGTCTTGGTGGTGAGGTTTTCATTTGGGACCTTGATGCTGCTCTTGCTCCTGTAGCCAAATCTGTGGATGCAAAAGAGG---

upper sequence: GLYMA19G43070.1 (Glycine max), 3'ss of exon 5
lower sequence: AT3G05090.1 (Arabidopsis thaliana), 3'ss of exon 5
gtaatgtactccaaacatcttatgcttcttattaagtgtatcgagaaaaagttcattttattgtttctatatgctccacattgaaacagatagctactttggttgaattatcaatttcaaatccattctttgatcctttaatagtgtcttgctttttagAACAATACTGTTGCCTCTGGTGGCCTTGGTGGGGAGGTTTTTATATGGGATATCGAGGCTGCCCTTGCTCC---CTCTAAGTGTAATGATGCTATGGTTGATG
||||| |    ||    || |    || |  |||    |  |    ||||    | || |||| |    |  |  | |  ||  |  | |||  | |||           ||| | ||  ||      | |||| || |  |  | ||     |||||||| |||  |||||| |||||||||||||||||||||||||||||||||||||| || |||||  |  | ||     | ||   |||||| ||||  |  |   
gtaattt--ctcatttgtcatgcttttttctttatagttcccactgaaaaa---aattgattggtatggtg-gtgcaagttttgaggatatatgtgcttc----------tcattgtcgcat------tctgattctatcttgatttcacaacttttagAATAATGTTGTTGCATCTGGTGGCCTTGGTGGGGAGGTTTTTATATGGGATATTGAAGCTGCTTTGTCACCAGTTACCAAACCTAATGACGCTAATGAAG---

upper sequence: GLYMA19G43070.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv14s0030g01350.t01 (Vitis vinifera), 3'ss of exon 5
gtaatgtactc--caaacatcttatgcttcttattaagtgtatcgagaaaaagttcattttattgt-------ttctatatgctccacattgaaacagatagc---tactttgg----ttgaattatcaatt-tcaaatccattctttgatcctttaatagtgtcttgctttttagAACAATACTGTTGCCTCTGGTGGCCTTGGTGGGGAGGTTTTTATATGGGATATCGAGGCTGCCCTTGCTCC---CTCTAAGTGTAATGATGCTATGGTTGATG
||||| |  |   ||||  | | |||    ||||| | || || ||  ||  |||| | | | |||       || | || | | ||  || ||    || |    || || ||    |||  | ||   || ||     |||| | ||||||||| |||||||| ||| ||||||| ||||  |||||||||||||||||||||||||||||||||| |||||||| | || ||||| ||  ||||   ||| ||||  | |||||| ||||  |   
gtaatttctttgtcaaaattttcatggaa-ttatttactgcatagatgaagggttcttgtcagtgtaatgctgttatttaagtttcatgttcaatttaatggtgcatatttgggggcattgtgtcatattttgtcgttatcattttctgatccttttatagtgtcatgcattttagAGCAATGTTGTTGCCTCTGGTGGCCTTGGTGGGGAGGTTTTTGTATGGGATCTGGAAGCTGCACTAACTCCAGTCTCAAAGTCAAGTGATGCAATGGAGG---


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaattatcaatttcaaatccattctttgatcctttaatagtgtcttgctttttagAACAATACTGTTGCCTCTGGTGGCCTTGGTGGGGAGGTTTTTATATGGGATATCGAGGCTGCCCTTGCTCCCTCTAAGTGTAATGATGCTATGGTTGATG
                               ctttaat  putative branch site (score: 4)
                                          tcttgcttttt  putative PPT
        aatttcaaat  TA-rich tract