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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgtacttcaaacatcttatgcttcttattaagtgtgtcaagaaaaaagttcattttattgtttttatacgttccacattgagtcagatagaaactttggttgaattatcagtatcgtcaaatccattatttgatcgtttaatagtgtcatgcattttagAGCAATATTGTTGCCTCTGGTGGCCTTGGCGGGGAGGTTTTTATATGGGATATCGAGGCTGCCATCACTCCGGTTTCTAAGTGCAATGATGCTACAATTG

Basic information

species Glycine max
transcript GLYMA19G42990.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G42990.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os12g06810.2 (Oryza sativa), 3'ss of exon 5
gtaatgtacttcaaacatcttatgcttcttattaagtgtgtcaagaaaaaagttcattttattgtttttatacgttccacattgagtcagatagaaactttggttgaattatcagtatcgtcaaatccattatttgatcgtttaatagtgtcatgcattttagAGCAATATTGTTGCCTCTGGTGGCCTTGGCGGGGAGGTTTTTATATGGGATATCGAGGCTGCCATCACTCCGGTTTCTAAGTGCAATGATGCTACAATTG
                                                                         ||     ||  ||     ||     ||  || ||| ||    | |  ||   |   || |       |||  |  |    |||| | ||||||||||||||||||||||||||||||||||| ||||| |||||||||||  | ||  || |  |  |||| ||  | || |     ||||| | |   |
-------------------------------------------------------------------------gtatattatccagc--actatgcttttctgtggaactactcattttatcccttttgttttacatgtttttttttattctctgcaatgtagAGCAATATTGTTGCCTCTGGTGGCCTTGGCGGTGAGGTCTTTATATGGGACCTTGATTCTTCTCTTGCTCCTGTGGCCAAATCTGTAGATGCAAAAGAGG

upper sequence: GLYMA19G42990.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G167999_T01 (Zea mays), 3'ss of exon 5
gtaatgtacttcaaacatcttatgcttcttattaagtgtgtcaagaaaaaagttcattttattgtttttatacgttccacattgagtcagatagaaactttggttgaattatcagtatcgtcaaatccattatttgatcgtttaatagtgtcatgcattttagAGCAATATTGTTGCCTCTGGTGGCCTTGGCGGGGAGGTTTTTATATGGGATATCGAGGCTGCCATCACTCCGGTTTCTAAGTGCAATGATGCTACAATTG
                                                                   | |||   |||||| |        |      ||  || | ||| | ||  |  |||       | ||| |  ||||  | |  |  || ||| |||||||||||||| ||||||||||| ||||| || |||||||| || |||||  | || |||||  |  |||| ||  | || |     ||||| | |   |
------------------------------------------------------------------gtaatattatccacact--------tgtgcttttctgtggtatttttagccttttca-------ttttttacagtttttttgcctt-tgaattgtagAGCAATATTGTAGCCTCTGGTGGTCTTGGTGGTGAGGTTTTCATTTGGGACCTTGATGCTGCTCTTGCTCCTGTAGCCAAATCTGTGGATGCAAAAGAGG

upper sequence: GLYMA19G42990.1 (Glycine max), 3'ss of exon 5
lower sequence: AT3G05090.1 (Arabidopsis thaliana), 3'ss of exon 5
gtaatgtacttcaaacatcttatgcttcttattaagtgtgtcaa-gaaaaaagttcattttattgtttttatacgttccacattgagtcagatagaaactttggttgaattatcagtatcgtcaaatccattatttgatcgtttaatagtgtcatgcattttagAGCAATATTGTTGCCTCTGGTGGCCTTGGCGGGGAGGTTTTTATATGGGATATCGAGGCTGCCATCACTCCGGTTTCTAAGTGCAATGATGCTACAATTG
||||| |   |||    || |    || |  |||    |  ||  ||||||| || |||    || |  |  | |||     |||||   |||| |             || ||| | |||       ||||   ||||  | |  |  | |||    |||||||  ||| ||||||| |||||||||||||| ||||||||||||||||||||||| || |||||  |  | || ||| | ||    ||||| ||||     |
gtaattt--ctcatttgtcatgcttttttctttatagttcccactgaaaaaaattgattggtatggtggtgcaagtt-----ttgag---gatatatgt--------gcttctcattgtcg-------catt--ctgattctatcttgatttcacaacttttagAATAATGTTGTTGCATCTGGTGGCCTTGGTGGGGAGGTTTTTATATGGGATATTGAAGCTGCTTTGTCACCAGTTACCAAACCTAATGACGCTAATGAAG

upper sequence: GLYMA19G42990.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv14s0030g01350.t01 (Vitis vinifera), 3'ss of exon 5
gtaatgtactt--caaacatcttatg---cttcttattaagtgtgtcaagaaaaaagttcattttattgtttttat--acgttccacattgagtcagataga--aactttggttgaattat--ca-gtatcgtcaaatccattatttgatcgtttaatagtgtcatgcattttagAGCAATATTGTTGCCTCTGGTGGCCTTGGCGGGGAGGTTTTTATATGGGATATCGAGGCTGCCATCACTCCGGTTTCTAAGTGCAATGATGCTACAATTG
||||| |  ||  ||||  | | |||    |  ||| |   |   | |||        ||| | || || | ||||  | ||| ||  || | |   || |   |  |||||  | ||| |  ||  | | |||     |||| | ||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||| | || |||||  | ||||| || || ||||  | |||||| |     |
gtaatttctttgtcaaaattttcatggaattatttactgcatagatgaagggttcttgtcagtgtaatgctgttatttaagtttcatgttcaatttaatggtgcatatttgggggcattgtgtcatattttgtcgttatcattttctgatccttttatagtgtcatgcattttagAGCAATGTTGTTGCCTCTGGTGGCCTTGGTGGGGAGGTTTTTGTATGGGATCTGGAAGCTGCACTAACTCCAGTCTCAAAGTCAAGTGATGCAATGGAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatcagtatcgtcaaatccattatttgatcgtttaatagtgtcatgcattttagAGCAATATTGTTGCCTCTGGTGGCCTTGGCGGGGAGGTTTTTATATGGGATATCGAGGCTGCCATCACTCCGGTTTCTAAGTGCAATGATGCTACAATTG
                               gtttaat  putative branch site (score: 4)
                    attatttgat  TA-rich tract