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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttggaacgatatgtgcctttttcgcaatgtagcagcaacgaaggtgtcaatgctaagtactgaatttataaatgatgttgcagGTGCTAAACCAGGATGAGACACCTTTACTGTACAGTCTTGTATTTGGCGAGGGTGTTGTGAATGATGCTACATCTGTTGTGCTTTTTAATGCAATAAAAA

Basic information

species Glycine max
transcript GLYMA19G42900.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G42900.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os05g05590.1 (Oryza sativa), 3'ss of exon 6
-gtttggaacgatatgtgcctttttcgcaatgtagcagcaacgaaggtgtcaatgctaagtactgaatttataaatgatgttgcagGTGCTAAACCAGGATGAGACACCTTTACTGTACAGTCTTGTATTTGGCGAGGGTGTTGTGAATGATGCTACATCTGTTGTGCTTTTTAATGCAATAAAAA
  |||   |    |||  |  || |     | | | |  |   ||     ||    ||| ||   |||||    |     ||||||||||| ||||| || || |||||  |||| || ||||| || ||||| || || ||||| ||||||||||||||||||||||| |||||||||||  || 
gtttttccatttaatgacctgttgttaatgtcttgtaaaatgaaacagcacaccattaaatatgcaattttgttac----ttgcagGTGCTTAACCAAGACGAAACACCCCTACTCTATAGTCTGGTTTTTGGTGAAGGGGTTGTCAATGATGCTACATCTGTTGTGCTCTTTAATGCAATTGAAG

upper sequence: GLYMA19G42900.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os07g47100.2 (Oryza sativa), 3'ss of exon 5
gtttg--gaacgatatgtgcc-tttttcgcaatgtagcagcaacgaaggtgtcaatgctaagtactgaatttataaatgatgttgcagGTGCTAAACCAGGATGAGACACCTTTACTGTACAGTCTTGTATTTGGCGAGGGTGTTGTGAATGATGCTACATCTGTTGTGCTTTTTAATGCAATAAAAA
||| |  |||| |  | |||| |   |||  |   | | | |   || |||  ||||  | |  || ||     |||        ||||| || || |||||||||||||| ||  |||||||||| ||||| || || ||||||||||| |||||||||||  |||||||||| || ||| || | |
gttagttgaacaaattttgccatacctcgagagagacctggattcaacgtgctaatgtaatgatcttaaccccaaaa--------cagGTCCTCAATCAGGATGAGACACCCTTTTTGTACAGTCTGGTATTCGGTGAAGGTGTTGTGAACGATGCTACATCAATTGTGCTTTTCAACGCACTACAGA

upper sequence: GLYMA19G42900.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G063492_T01 (Zea mays), 3'ss of exon 6
----gtt-tggaacgatatgtgcctttttcgcaatgtagcagcaacgaaggtgtcaatgctaagtactgaatttataaatgatgttgcagGTGCTAAACCAGGATGAGACACCTTTACTGTACAGTCTTGTATTTGGCGAGGGTGTTGTGAATGATGCTACATCTGTTGTGCTTTTTAATGCAATAAAAA
    ||| | |||| || ||    ||||     ||  |     |   | |  | ||||  | | |    |||| || | |     |||||||||| ||||||||||| |||||  |||| || ||||| || ||||| || |||||||| |||||||| |||||||||||||| || ||||||||  |||
gtttgttgttgaacaatttgccatttttatcttataaaaattgagataggaagccaat--ttaattggaaattcattact-----tgcagGTGCTTAACCAGGATGAAACACCCCTACTCTATAGTCTAGTTTTTGGTGAAGGTGTTGTTAATGATGCCACATCTGTTGTGCTCTTCAATGCAATTGAAA

upper sequence: GLYMA19G42900.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G704237_T01 (Zea mays), 3'ss of exon 3
----gtttggaacgatatgtgcctttttcgcaatgtagcagcaacga-aggtgtcaatgctaagtactgaatttataaatgatgttgcagGTGCTAAACCAGGATGAGACACCTTTACTGTACAGTCTTGTATTTGGCGAGGGTGTTGTGAATGATGCTACATCTGTTGTGCTTTTTAATGCAATAAAAA-
    |||    | || || |||| ||||     | ||  |     || |||   | |   ||| |    |||| || | |     |||||||| ||| ||||||||| |||||  |||| || ||||| || ||||| || |||||||| |||||||| |||||||||||||| |||||||||||  ||| 
gtttgttgttgaaga-atctgccatttttatcttataaaaattgagataggaagccaatttaattgg-aaattcattact-----tgcagGTGTTAA-CCAGGATGAAACACCCCTACTCTATAGTCTAGTTTTTGGTGAAGGTGTTGTTAATGATGCCACATCTGTTGTGCTCTTTAATGCAATTGAAAA

upper sequence: GLYMA19G42900.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G701776_T01 (Zea mays), 3'ss of exon 2
----gtt-tggaacgatatgtgcctttttcgcaatgtagcagcaacgaaggtgtcaatgctaagtactgaatttataaatgatgttgcagGTGCTAAACCAGGATGAGACACCTTTACTGTACAGTCTTGTATTTGGCGAGGGTGTTGTGAATGATGCTACATCTGTTGTGCTTTTTAATGCAATAAAAA-
    ||| | |||| || ||    ||| ||  |    |   |  |  | |  | ||||  | | |    |||| || | |     |||||||| ||| ||||||||| |||||  |||| || ||||| || ||||| || |||||||| |||||||| |||||||||||||| || ||||||||  ||| 
gtttgttgttgaacaatctgccattttatcttataaaaattgagat-aggaagccaat--ttaattggaaattcattact-----tgcagGTGTTAA-CCAGGATGAAACACCCCTACTCTATAGTCTAGTTTTTGGTGAAGGTGTTGTTAATGATGCCACATCTGTTGTGCTCTTCAATGCAATTGAAAA

upper sequence: GLYMA19G42900.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G027851_T03 (Zea mays), 3'ss of exon 3
--------------------------------------------gtttggaacgatatgtgcctttttcgcaatgtagc--agcaacgaaggtgtcaatgctaagtactgaatttataaatgatgttg---cagGTGCTAAACCAGGATGAGACACCTTTACTGTACAGTCTTGTATTTGGCGAGGGTGTTGTGAATGATGCTACATCTGTTGTGCTTTTTAATGCAATAAAAA
                                             |||| |||  ||| |      |    |  | | |   |   |      || |||  |  |  ||| | | |  | |    | |   ||||| ||  | ||||||||||| || || ||||||||||| || || || ||||| || ||||| ||||| || ||||||||||| || || ||| |  | |
gttggttggttggttggttgctggaacaatctcatggacatttcatttgaaacagtatatcttgcctcttgaggggaacctggtccctgcttagtaaattatttgacctgtaatcaccattttactggaaacagGTCCTCCATCAGGATGAGACGCCCTTTCTGTACAGTCTCGTGTTCGGTGAGGGAGTCGTGAACGATGCCACGTCTGTTGTGCTCTTCAACGCACTCCAGA

upper sequence: GLYMA19G42900.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv14s0030g00710.t01 (Vitis vinifera), 3'ss of exon 5
gtttggaacgatatgtgcctttttcgcaatgtagcagcaacgaaggtgtcaatgctaagtactgaa---tttataaatgatgttgcagGTGCTAAACCAGGATGAGACACCTTTACTGTACAGTCTTGTATTTGGCGAGGGTGTTGTGAATGATGCTACATCTGTTGTGCTTTTTAATGCAATAAAAA
|| |||  |  ||       || | |||      || ||| |        | |  | |  ||| ||   |||     ||||| |||||||||| |||||||||||||| |||||||| || || || || ||||| ||||| ||||| ||||||||  |||| ||||| ||||| ||||||||  | |
gtatggtgcattacaaag--ttatagcagccagacaacaatggtaccaatagttgtgaa-actaaaccttttccttctgatgatgcagGTGCTTAACCAGGATGAGACGCCTTTACTTTATAGCCTGGTCTTTGGGGAGGGGGTTGTAAATGATGCAGCATCAGTTGTTCTTTTCAATGCAATCCAGA

upper sequence: GLYMA19G42900.1 (Glycine max), 3'ss of exon 5
lower sequence: PP1S207_23V6.2 (Physcomitrella patens), 3'ss of exon 6
--------------------------------------------------------------------------------------------------------------gtttggaacgatatgtgcctttttcgcaatgtagcagcaacgaaggtgtcaatgctaagtactgaatttataaatgatgttgcagGTGCTAAACCAGGATGAGACACCTTTACTGTACAGTCTTGTATTTGGCGAGGGTGTTGTGAATGATGCTACATCTGTTGTGCTTTTTAATGCAATAAAAA
                                                                                                               |||   |    |  ||| || |||      |   || ||    | | ||            |||     |   |  |  ||||||| || || ||||||||  ||||| |||| ||||||||||| ||||| || || ||||| ||||||||||| ||||| ||  | ||    ||  || | |
gtgggctgcttttttcgtcactgtcattgaagcactgctgtcaagctcatgtagaaagtgtagagaagatttcaagctttcgtagattggcagagtgtctttgctccatgattttatagagaagctgcattcttctgttcttgaaagtaattgggttttcctctggcgtggttgacgacttgttttttaatgcagGTTCTTAATCAGGATGATTCACCTCTACTATACAGTCTTGTGTTTGGAGAAGGAGTTGTCAATGATGCTACCTCTGTAGTCTTATTCCGGGCTGTACAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtagcagcaacgaaggtgtcaatgctaagtactgaatttataaatgatgttgcagGTGCTAAACCAGGATGAGACACCTTTACTGTACAGTCTTGTATTTGGCGAGGGTGTTGTGAATGATGCTACATCTGTTGTGCTTTTTAATGCAATAAAAA
                                  aatttataaatgatgt  TA-rich tract