1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtacagtttggatttaactttgtggctttgttcctttaattccttacagatgtaatagttttctattgatttctgtttcagCCATGATTCAGCAGCCTCGTATTCCTTCCTCTGGGTTGATGCCTGCAAGTGATGTTCTTATTCGTGCAAAGGAG
species | Glycine max |
transcript | GLYMA19G42180.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACTTTCAGCAGGGTCTCCGGGTAAACGCTNTATGATGCCACATGCTAAAG CCATGATTCAGCAGCCTCGTATTCCTTCCTCTEST: gi|254314926|gb|GR829919.1|GR829919
genomic: ACTTTCAGCAGGGTCTCCGGGTAAACGCTTTATGATGCCACATGCTAAAGgtacagtttg ... tctgtttcagCCATGATTCAGCAGCCTCGTATTCCTTCCTCT
EST: ACTTTCAGCAGGGTCTCCGGGTAAACGCTTTATGATGCCACATGCTAAAG CCATGATTCAGCAGC-TCGTATTCEST: gi|193318762|gb|FK284268.1|FK284268
genomic: ACTTTCAGCAGGGTCTCCGGGTAAACGCTTTATGATGCCACATGCTAAAGgtacagtttg ... tctgtttcagCCATGATTCAGCAGCCTCGTATTC
EST: ACTTTCAGCAGGGTCTCCGGGTAAACGCTTTATGATGCCACATGCTAAAG CCATGATTCAGCAGCCTCGTATTCCTTCCTCTGGGTTGATGCCTGCAAGTG
genomic: ACTTTCAGCAGGGTCTCCGGGTAAACGCTTTATGATGCCACATGCTAAAGgtacagtttg ... tctgtttcagCCATGATTCAGCAGCCTCGTATTCCTTCCTCTGGGTTGATGCCTGCAAGTG
tttgttcctttaattccttacagatgtaatagttttctattgatttctgtttcagCCATGATTCAGCAGCCTCGTATTCCTTCCTCTGGGTTGATGCCTGCAAGTGATGTTCTTATTCGTGCAAAGGAG
tttctgtttc CT-rich tract
taatagttttctatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacagtttggatttaactttgtggctttgttcctttaattccttacagatgtaatagttttctattgatttctgtttcagCCATGATTCAGCAGCCTCGTATTCCTTCCTCTGGGTTGATGCCTGCAAGTGATGTTCTTATTCGTGCAAAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG