1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgtgtaaaattagttgactgaaattccaactactatttttgatggctactttctactttactagtcacacaataagaacattgatgcattaatgatgtcaatatattttaatttttcttggccttttgtttatagCAACGGAAGTTGGTGTTCAGTATGGAATATTGAGTTCAAAGATGAAAAACAAACAGTGGAAGTAAAGGGTAAAATGCAG
species | Glycine max |
transcript | GLYMA19G42150.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAGCTTGCTGTGGTAATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTG CAACGGAAGTTTGTGTTCAGTATGGEST: gi|27425324|gb|CA936844.1|CA936844
genomic: GAGCTTGCTGTGGTAATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTGgtgtgtaaaa ... ttgtttatagCAACGGAAGTTGGTGTTCAGTATGG
EST: GAGCTTGCTGTGGTAATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTG CAACGGAAGTTGGTGTTCAGTATGGAATATTGAGTTCAAAGATGAAAAACAEST: gi|9819909|gb|BE555352.1|BE555352
genomic: GAGCTTGCTGTGGTAATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTGgtgtgtaaaa ... ttgtttatagCAACGGAAGTTGGTGTTCAGTATGGAATATTGAGTTCAAAGATGAAAAACA
EST: GAGCTTGCTGTGGTAATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTG CAACGGAAGTTGGTGTTCAGTATGGAATATTGAGTTCAAAGATGAAAAACAEST: gi|6502294|gb|AW203667.1|AW203667
genomic: GAGCTTGCTGTGGTAATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTGgtgtgtaaaa ... ttgtttatagCAACGGAAGTTGGTGTTCAGTATGGAATATTGAGTTCAAAGATGAAAAACA
EST: GAGCTTGCTGTGGTAATGTCTGCTGCTAGGCATAGCCCACAGAATATCTG CAACGGAAGGTGGTGTTCAGTATGGGATATTGAGTTCAAAGATGAGAAACAEST: gi|9203355|gb|BE329641.1|BE329641
genomic: GAGCTTGCTGTGGTAATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTGgtgtgtaaaa ... ttgtttatagCAACGGAAGTTGGTGTTCAGTATGGAATATTGAGTTCAAAGATGAAAAACA
EST: GAGCTTGCTGTGGTAATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTG CAACGGAAGTTGGTGTTCAGTATGGAATATTGAGTTCAAAGATGAAAAACAEST: gi|27424501|gb|CA936021.1|CA936021
genomic: GAGCTTGCTGTGGTAATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTGgtgtgtaaaa ... ttgtttatagCAACGGAAGTTGGTGTTCAGTATGGAATATTGAGTTCAAAGATGAAAAACA
EST: GAGCTTGCTGTGGTAATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTG CAACGGAAAGT-GGTGTTCAGTATGGAATEST: gi|7234639|gb|AW569975.1|AW569975
genomic: GAGCTTGCTGTGGTAATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTGgtgtgtaaaa ... ttgtttatagCAACGGAA-GTTGGTGTTCAGTATGGAAT
EST: GAGCTTGCTGTGGTAATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTG CAACGGAGGTTGGTGTTCAGTATGGAATATTGAGTTCAAAGATGAAAAACAEST: gi|192295752|gb|FG992593.1|FG992593
genomic: GAGCTTGCTGTGGTAATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTGgtgtgtaaaa ... ttgtttatagCAACGGAAGTTGGTGTTCAGTATGGAATATTGAGTTCAAAGATGAAAAACA
EST: GAGCTTGCTGTGGTAATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTG CAACGGAAGTTGGTGTTCAGTATGGAATATTGAGTTCAAAGATGGAAAACAEST: gi|151412172|gb|EV281984.1|EV281984
genomic: GAGCTTGCTGTGGTAATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTGgtgtgtaaaa ... ttgtttatagCAACGGAAGTTGGTGTTCAGTATGGAATATTGAGTTCAAAGATGAAAAACA
EST: GAGCTTGCTGTGGTAATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTG CAACGGAAGTTGGTGTTCAGTATGGAATATTGAGTTCAAAGATGAAAAACAEST: gi|14516434|gb|BI095106.1|BI095106
genomic: GAGCTTGCTGTGGTAATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTGgtgtgtaaaa ... ttgtttatagCAACGGAAGTTGGTGTTCAGTATGGAATATTGAGTTCAAAGATGAAAAACA
EST: GGCATAGCCCACAGAATTTCTG CAACGGAAGTTGGTGTTCAGTATGGAATATTGAGTTCAAAGATGAAAAACAEST: gi|14258566|gb|BG881474.1|BG881474
genomic: GGCATAGCCCACAGAATTTCTGgtgtgtaaaa ... ttgtttatagCAACGGAAGTTGGTGTTCAGTATGGAATATTGAGTTCAAAGATGAAAAACA
EST: GAGCTTGCTGTGGTAATTTCTGCTGCTAGGCATACCCCACAGAATTTCTG CAACGGAAGTTGGTGTTCAGTATGGAATATTGAGTTCAAAGATGAAAAACA
genomic: GAGCTTGCTGTGGTAATTTCTGCTGCTAGGCATAGCCCACAGAATTTCTGgtgtgtaaaa ... ttgtttatagCAACGGAAGTTGGTGTTCAGTATGGAATATTGAGTTCAAAGATGAAAAACA
ttgatgcattaatgatgtcaatatattttaatttttcttggccttttgtttatagCAACGGAAGTTGGTGTTCAGTATGGAATATTGAGTTCAAAGATGAAAAACAAACAGTGGAAGTAAAGGGTAAAATGCAG
ttttaat putative branch site (score: 3)
tttttcttggcctttt CT-rich tract
attaatgatgtcaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtaaaattagttgactgaaattccaactactatttttgatggctactttctactttactagtcacacaataagaacattgatgcattaatgatgtcaatatattttaatttttcttggccttttgtttatagCAACGGAAGTTGGTGTTCAGTATGGAATATTGAGTTCAAAGATGAAAAACAAACAGTGGAAGTAAAGGGTAAAATGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG