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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taaattataaaattttaattgcatataaagaaaaagtctctggtaatattttgtactatgccttcaatctccatcttgtttataattttctcaatgtcagGTTTATTTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATCTATTACCTCATGCAGAG

Basic information

species Glycine max
transcript GLYMA19G41540.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209712446|gb|BW671298.1|BW671298
EST:     GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACA                         GTTTATTTACTGCTCTTCTGCTGGTGTCTATCT
genomic: GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACAgtaagcttcc ... tcaatgtcagGTTTATTTACTGCTCTTCTGCTGGTGTCTATCT
EST: gi|8670400|gb|BE191507.1|BE191507
EST:     GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACA                         GTTTATNTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATCTATTACC
genomic: GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACAgtaagcttcc ... tcaatgtcagGTTTATTTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATCTATTACC
EST: gi|209702885|gb|BW655995.1|BW655995
EST:     GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACA                         GTTTATTTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATCTATTACC
genomic: GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACAgtaagcttcc ... tcaatgtcagGTTTATTTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATCTATTACC
EST: gi|105632122|gb|DW246321.1|DW246321
EST:     GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACA                         GTTTATTTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATCTATTACC
genomic: GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACAgtaagcttcc ... tcaatgtcagGTTTATTTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATCTATTACC
EST: gi|27426223|gb|CA937743.1|CA937743
EST:     GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACA                         GTTTATTTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATCTATTAAC
genomic: GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACAgtaagcttcc ... tcaatgtcagGTTTATTTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATCTATTACC
EST: gi|213595578|gb|DB962434.1|DB962434
EST:     GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACA                         GTTTATTTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATCTATTACC
genomic: GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACAgtaagcttcc ... tcaatgtcagGTTTATTTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATCTATTACC
EST: gi|9903043|gb|BE612011.1|BE612011
EST:     GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACA                         GTTTATTTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATCTATTACC
genomic: GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACAgtaagcttcc ... tcaatgtcagGTTTATTTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATCTATTACC
EST: gi|120530586|gb|EH258719.1|EH258719
EST:     GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACA                         GTTTATTTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATCTATTACC
genomic: GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACAgtaagcttcc ... tcaatgtcagGTTTATTTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATCTATTACC
EST: gi|9258516|gb|BE346663.1|BE346663
EST:     TGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACA                         GTTTATTTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATCTATTACC
genomic: TGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACAgtaagcttcc ... tcaatgtcagGTTTATTTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATCTATTACC
EST: gi|5753286|gb|AI960573.1|AI960573
EST:     GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGGACA                         GTTTATTTACTGCTCTTCTGCTG-TGTCTATCTC
genomic: GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACAgtaagcttcc ... tcaatgtcagGTTTATTTACTGCTCTTCTGCTGGTGTCTATCTC
EST: gi|16348529|gb|BI974124.1|BI974124
EST:     GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACA                         GTTTATTTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATCTATTACC
genomic: GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACAgtaagcttcc ... tcaatgtcagGTTTATTTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATCTATTACC
EST: gi|213617672|gb|DB959340.1|DB959340
EST:     GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACA                         GTTTATTTACTGCTCTTCTGCTG
genomic: GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACAgtaagcttcc ... tcaatgtcagGTTTATTTACTGCTCTTCTGCTG
EST: gi|7284172|gb|AW596769.1|AW596769
EST:     GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACA                         GTTTATTTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATCTATTACC
genomic: GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACAgtaagcttcc ... tcaatgtcagGTTTATTTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATCTATTACC
EST: gi|23064426|gb|BU579199.1|BU579199
EST:     GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACA                         GTTTATTTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATCTATTACC
genomic: GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACAgtaagcttcc ... tcaatgtcagGTTTATTTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATCTATTACC
EST: gi|7686625|gb|AW757282.1|AW757282
EST:     GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACA                         GTTTATTTACTGCTCTTCTGCTGGTGTCTATCTCANATCTGATCTATTACC
genomic: GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACAgtaagcttcc ... tcaatgtcagGTTTATTTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATCTATTACC
EST: gi|120533740|gb|EH261873.1|EH261873
EST:     GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACA                         GTTTATTTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATCTATTACC
genomic: GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACAgtaagcttcc ... tcaatgtcagGTTTATTTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATCTATTACC
EST: gi|209707067|gb|BW653204.1|BW653204
EST:     GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACA                         GTTTATTTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATCTATTACC
genomic: GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACAgtaagcttcc ... tcaatgtcagGTTTATTTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATCTATTACC
EST: gi|209719660|gb|BW669219.1|BW669219
EST:     GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACA                         GTTTATTTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATCTATTACC
genomic: GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACAgtaagcttcc ... tcaatgtcagGTTTATTTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATCTATTACC
EST: gi|15286291|gb|BI470182.1|BI470182
EST:     GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACA                         GTTTATTTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATCTATTACC
genomic: GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACAgtaagcttcc ... tcaatgtcagGTTTATTTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATCTATTACC
EST: gi|7925259|gb|AW831285.1|AW831285
EST:     GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACA                         GTTTATTTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATCTATTACC
genomic: GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACAgtaagcttcc ... tcaatgtcagGTTTATTTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATCTATTACC
EST: gi|15287371|gb|BI471262.1|BI471262
EST:     GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACA                         GTTTATTTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATCTATTACC
genomic: GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACAgtaagcttcc ... tcaatgtcagGTTTATTTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATCTATTACC
EST: gi|20449765|gb|BQ253889.1|BQ253889
EST:     GAGGCAGATGAAGNTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACA                         GTTTATTTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATCTA
genomic: GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACAgtaagcttcc ... tcaatgtcagGTTTATTTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATCTA
EST: gi|22523298|gb|BU082109.1|BU082109
EST:     GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACA                         GTTTATTTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATCTATTACC
genomic: GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACAgtaagcttcc ... tcaatgtcagGTTTATTTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATCTATTACC
EST: gi|20497984|gb|BQ272914.1|BQ272914
EST:     GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACA                         GTTTATTTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATCTATTA
genomic: GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACAgtaagcttcc ... tcaatgtcagGTTTATTTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATCTATTA
EST: gi|17519820|gb|BM188862.1|BM188862
EST:     GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACA                         GTTTATTTACTGCTCTTCTGCTGGTGTCTATCTC
genomic: GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACAgtaagcttcc ... tcaatgtcagGTTTATTTACTGCTCTTCTGCTGGTGTCTATCTC
EST: gi|120533723|gb|EH261856.1|EH261856
EST:     GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACA                         GTTTATTTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATCTATTACC
genomic: GAGGCAGATGAAGTTGAGCCCATACTGGATGCGCTGCCTAATCTGGAACAgtaagcttcc ... tcaatgtcagGTTTATTTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATCTATTACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atattttgtactatgccttcaatctccatcttgtttataattttctcaatgtcagGTTTATTTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATCTATTACCTCATGCAGAG
                                        ttttctc  CT-rich tract
                           atcttgtttataattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
taaattataaaattttaattgcatataaagaaaaagtctctggtaatattttgtactatgccttcaatctccatcttgtttataattttctcaatgtcagGTTTATTTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATCTATTACCTCATGCAGAG

- - - - - - - - - -tgcatat
- - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - -gtctctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ctatgcc