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gtatgcttaatcatgtcagtttggttttgtcatgatccttttgtcagttttattttggaaaatggctttgttaatgttttggattattttcttatcttactgaggttgtatctgttttcttgatatactgcagATCTTTAGGGCACTCTCTTATATTCATCGTTGCATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTA
species | Glycine max |
transcript | GLYMA19G41420.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGTTGAACCAACGGATGCCTCTGATATATGTAAAACTCTATACATACCAT ATCTTTAGGGCACTCTCTTATATTCATCGNTGCATTGGAGTCTGCCATCGGEST: gi|15286620|gb|BI470511.1|BI470511
genomic: AGTTGAACCAACGGATGCCTCTGATATATGTAAAACTCTATACATACCAGgtatgcttaa ... tatactgcagATCTTTAGGGCACTCTCTTATATTCATCGTTGCATTGGAGTCTGCCATCGG
EST: AGTTGAACCAACGGATGCCTCTGATATATGTAAAACTCTATACATACCAG ATCTTTAGGGCACTCTCTTATATTCATCGTTGCATTGGAGTCTGCCATCGGEST: gi|208213207|gb|GE010572.1|GE010572
genomic: AGTTGAACCAACGGATGCCTCTGATATATGTAAAACTCTATACATACCAGgtatgcttaa ... tatactgcagATCTTTAGGGCACTCTCTTATATTCATCGTTGCATTGGAGTCTGCCATCGG
EST: GGTTGAACCAACGGATGCCTCTGATATATGTAAAACTCTATACATACCAG ATCTTTAGGGCACTCTCTTATATTCATCGTTGCATTGGAGTCTGCCATCGGEST: gi|6963904|gb|AW432597.1|AW432597
genomic: AGTTGAACCAACGGATGCCTCTGATATATGTAAAACTCTATACATACCAGgtatgcttaa ... tatactgcagATCTTTAGGGCACTCTCTTATATTCATCGTTGCATTGGAGTCTGCCATCGG
EST: AGTTGAACCAACGGATGCCTCTGATATATGTAAAACTCTATACATACCAG ATCTTTAGGGCACTCTCTTATATTCATCGTTGCATTGGAGTCTGCCATCGGEST: gi|15814589|gb|BI786864.1|BI786864
genomic: AGTTGAACCAACGGATGCCTCTGATATATGTAAAACTCTATACATACCAGgtatgcttaa ... tatactgcagATCTTTAGGGCACTCTCTTATATTCATCGTTGCATTGGAGTCTGCCATCGG
EST: AGTTGAACCAACGTATGCCTCTGATATATGTAAAACTCTATACATACCAG ATCTTTAGGGCACTCTCTTATATTCATCGTTGCATTGGAGTCTGCCATCGG
genomic: AGTTGAACCAACGGATGCCTCTGATATATGTAAAACTCTATACATACCAGgtatgcttaa ... tatactgcagATCTTTAGGGCACTCTCTTATATTCATCGTTGCATTGGAGTCTGCCATCGG
ttggattattttcttatcttactgaggttgtatctgttttcttgatatactgcagATCTTTAGGGCACTCTCTTATATTCATCGTTGCATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTA
ttattttcttatctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcttaatcatgtcagtttggttttgtcatgatccttttgtcagttttattttggaaaatggctttgttaatgttttggattattttcttatcttactgaggttgtatctgttttcttgatatactgcagATCTTTAGGGCACTCTCTTATATTCATCGTTGCATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG