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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttatagacatatataatgctatttcagtaatctttcatctcatgctatgtacatctcattttgcttcagGCTCTTCTTTCGGGATGCTCTGCGGGTGGCCTGGCTACTATTATTCATTGTGATGAATTTCGTGGTCTCTTTCCAAGGACCACCAAAGTGAAATGTCTTA

Basic information

species Glycine max
transcript GLYMA19G41240.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151407914|gb|EV277729.1|EV277729
EST:     CAGCTGCAATGGAAGATTTGATGTCAAAAGGAATGCGTTTTGCCAATCAC                         GCTCTTCTTTCGGGATGCTCTGCGGGTGGCCTGGCTACTATTATTCATTGT
genomic: CAGCTGCAATGGAAGATTTGATGTCAAAAGGAATGCGTTTTGCCAATCAGgttatagaca ... tttgcttcagGCTCTTCTTTCGGGATGCTCTGCGGGTGGCCTGGCTACTATTATTCATTGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgctatttcagtaatctttcatctcatgctatgtacatctcattttgcttcagGCTCTTCTTTCGGGATGCTCTGCGGGTGGCCTGGCTACTATTATTCATTGTGATGAATTTCGTGGTCTCTTTCCAAGGACCACCAAAGTGAAATGTCTTA
                                       tctcattttgcttc  CT-rich tract
             taatcttt  TA-rich tract