1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tgttggaatggttattttttatgatttgctgtttctttccagaaggacattttattttgaaaagattagtacttgtctgattgtcttacttttccatcagGTTGCTTGGGTGACAAAGTCTGGGGAATCCGAATTAGAAATTCCTATAGCTATTCGTCCTACTAGTGAAACAGTGATGTATCCCTACTACTCTAAGTGGA
species | Glycine max |
transcript | GLYMA19G40930.4 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGGAGTTCTGCAAAAGGAGAAGGACCACGTTGAGGGTTTTGCTCCTGAG GTTGCTTGGGTGACAAAGTCTGGGGAATCCGAATTAGAAATTCCTATAGCTEST: gi|7591393|gb|AW707127.1|AW707127
genomic: CTGGAGTTCTGCAAAAGGAGAAGGACCACGTTGAGGGTTTTGCTCCTGAGgtgagagttt ... tttccatcagGTTGCTTGGGTGACAAAGTCTGGGGAATCCGAATTAGAAATTCCTATAGCT
EST: CTGGAGTTCTGCAAAAGGAGAAGGACCACGTTGAGGGTTTTGCTCCTGAG GTTGCTTGGGTGACAAAGTCTGGGGAATCCGAATTAGAAATTCCTATAGCTEST: gi|9899427|gb|BE608395.1|BE608395
genomic: CTGGAGTTCTGCAAAAGGAGAAGGACCACGTTGAGGGTTTTGCTCCTGAGgtgagagttt ... tttccatcagGTTGCTTGGGTGACAAAGTCTGGGGAATCCGAATTAGAAATTCCTATAGCT
EST: TGGAGTTCTGCAAAAGGAGAAGGACCACGTTGAGGGTTTTGCTCCTGAG GTTGCTTGGGTGACAAAGTCTGGGGAATCCGAATTAGAAATTCCTATAGCTEST: gi|193405049|gb|FK375492.1|FK375492
genomic: TGGAGTTCTGCAAAAGGAGAAGGACCACGTTGAGGGTTTTGCTCCTGAGgtgagagttt ... tttccatcagGTTGCTTGGGTGACAAAGTCTGGGGAATCCGAATTAGAAATTCCTATAGCT
EST: CTGGAGTTCTGCAAAAGGAGAAGGACCACGTTGAGGGTTTTGCTCCTGAG GTTGCTTGGGTGACAAAGTCTGGGGAATCCGAATTAGAAATTCCTATAGCTEST: gi|193310687|gb|FK274611.1|FK274611
genomic: CTGGAGTTCTGCAAAAGGAGAAGGACCACGTTGAGGGTTTTGCTCCTGAGgtgagagttt ... tttccatcagGTTGCTTGGGTGACAAAGTCTGGGGAATCCGAATTAGAAATTCCTATAGCT
EST: CTGGAGTTCTGCAAAAGGAGAAGGACCACGTTGAGGGTTTTGCTCCTGAG GTTGCTTGGGTGACAAAGTCTGGGG
genomic: CTGGAGTTCTGCAAAAGGAGAAGGACCACGTTGAGGGTTTTGCTCCTGAGgtgagagttt ... tttccatcagGTTGCTTGGGTGACAAAGTCTGGGG
gacattttattttgaaaagattagtacttgtctgattgtcttacttttccatcagGTTGCTTGGGTGACAAAGTCTGGGGAATCCGAATTAGAAATTCCTATAGCTATTCGTCCTACTAGTGAAACAGTGATGTATCCCTACTACTCTAAGTGGA
gtcttac putative branch site (score: 3)
ttgtcttacttttcc CT-rich tract
tttattttgaaaagat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttggaatggttattttttatgatttgctgtttctttccagaaggacattttattttgaaaagattagtacttgtctgattgtcttacttttccatcagGTTGCTTGGGTGACAAAGTCTGGGGAATCCGAATTAGAAATTCCTATAGCTATTCGTCCTACTAGTGAAACAGTGATGTATCCCTACTACTCTAAGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - tgctgtt
- - - - - - - - - - - - - - - - - ctttcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaagat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgattg