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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtacttgttttcccgttttaaataaaaacaaacatttacaatctttgcctacggagagctaaaccaatgaaacttcatataccatttttgatgcagGTAATTATATTAAAGGCTAGCGGAATTATTATACCAATGTACATAGTTATTAAGATTATCGGAGCCATTCAGAACAGTATTCAGCACTATCAGGATTCTG

Basic information

species Glycine max
transcript GLYMA19G40340.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213606122|gb|DB982423.1|DB982423
EST:     TGCTCACATATGGAACGGAAGATTACCCATTTACACTACTAACT                         GTAATTATATTAAAGGCTAGCGGAATTATTATACCAATGTACATAGTTATT
genomic: TGCTCACATATGGAACGGAAGATTACCCATTTACACTACTAACTgtaagtactt ... tttgatgcagGTAATTATATTAAAGGCTAGCGGAATTATTATACCAATGTACATAGTTATT
EST: gi|151407045|gb|EV276860.1|EV276860
EST:     TGCTCACATATGGAACGGAAGATTACCCATTTACACTACTAACT                         GTAATTATATTAAAGGCTAGCGGAATTATTATACCAATGTACATAGTTATT
genomic: TGCTCACATATGGAACGGAAGATTACCCATTTACACTACTAACTgtaagtactt ... tttgatgcagGTAATTATATTAAAGGCTAGCGGAATTATTATACCAATGTACATAGTTATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttgcctacggagagctaaaccaatgaaacttcatataccatttttgatgcagGTAATTATATTAAAGGCTAGCGGAATTATTATACCAATGTACATAGTTATTAAGATTATCGGAGCCATTCAGAACAGTATTCAGCACTATCAGGATTCTG
                                        ccattttt  CT-rich tract
                                          atttttgat  TA-rich tract