1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgtaaatgctaatttagccatgtattataaactgatattcatgctgccttccagttgctggcaaaactagacattctctgattaatttcacctttttcagATCGCAAACCACCTGGAGTGGGACGTGGAAGGGGAAGAGGCAGAGAGGATGGTCCTGGTGGGCGCCCAGCAAAAGGAATTGGGCGTGGTCTTGATGATGG
species | Glycine max |
transcript | GLYMA19G39780.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTTATTGACAAAGTTCAAGAAGAAACCAAGAGCCGTGCAG ATCGCAAACCACCTGGAGTGGGACGTGGAAGGGGAAGAGGCAGAGAGGATGEST: gi|9259879|gb|BE348026.1|BE348026
genomic: GTTATTGACAAAGTTCAAGAAGAAACCAAGAGCCGTGCAGgtaagcattg ... cctttttcagATCGCAAACCACCTGGAGTGGGACGTGGAAGGGGAAGAGGCAGAGAGGATG
EST: GTTATTGACAAAGTTCAAGAAGAAACCAAGAGCCGTGCAG ATCGCAAACCACCTGGAGTGGGACGTGGAAGGGGAAGAGGCAGAGAGGATG
genomic: GTTATTGACAAAGTTCAAGAAGAAACCAAGAGCCGTGCAGgtaagcattg ... cctttttcagATCGCAAACCACCTGGAGTGGGACGTGGAAGGGGAAGAGGCAGAGAGGATG
gccttccagttgctggcaaaactagacattctctgattaatttcacctttttcagATCGCAAACCACCTGGAGTGGGACGTGGAAGGGGAAGAGGCAGAGAGGATGGTCCTGGTGGGCGCCCAGCAAAAGGAATTGGGCGTGGTCTTGATGATGG
gattaat putative branch site (score: 3)
tttcacctttttc CT-rich tract
tgattaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtaaatgctaatttagccatgtattataaactgatattcatgctgccttccagttgctggcaaaactagacattctctgattaatttcacctttttcagATCGCAAACCACCTGGAGTGGGACGTGGAAGGGGAAGAGGCAGAGAGGATGGTCCTGGTGGGCGCCCAGCAAAAGGAATTGGGCGTGGTCTTGATGATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- taaatgc
- - - - - - - - -ccatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaactag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cattctc