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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcttattgcaccaaagattgcatgttactttaaaaaatgatgctcttattgaagtagtacttaccaagttttctttacattcttagGATAATATTGCACTAATAGTCGTTTTAGAAGCAAAAGTTATCAATCAGCCTGTTGATAATCCAGGGAAAAGACAGCTTCTTTGTGTA

Basic information

species Glycine max
transcript GLYMA19G39210.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6501991|gb|AW203364.1|AW203364
EST:     CTGTGATTCCGACCACTCAGAAGAAAACTGCCTTGAATAGACTGGTTAAG                         GATAATATNGCACTAATAGTCGTTGTAGAAGCAAAAGTTATCAATCAGCCT
genomic: CTGTGATTCCGACCACTCAGAAGAAAACTGCCTTGAATAGACTGGTTAAGgtgcttattg ... acattcttagGATAATATTGCACTAATAGTCGTTTTAGAAGCAAAAGTTATCAATCAGCCT
EST: gi|208248499|gb|GE048140.1|GE048140
EST:     CTGTGATTCCGACCACTCAGAAGAAAACTGCCTTGAATAGACTGGTTAAG                         GATAATATTGCACTAATAGTCGTTTTAGAAGCAAAAGTTATCAATCAGCCT
genomic: CTGTGATTCCGACCACTCAGAAGAAAACTGCCTTGAATAGACTGGTTAAGgtgcttattg ... acattcttagGATAATATTGCACTAATAGTCGTTTTAGAAGCAAAAGTTATCAATCAGCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaaatgatgctcttattgaagtagtacttaccaagttttctttacattcttagGATAATATTGCACTAATAGTCGTTTTAGAAGCAAAAGTTATCAATCAGCCTGTTGATAATCCAGGGAAAAGACAGCTTCTTTGTGTA
                          tacttac  putative branch site (score: 1)
                                     ttttctttacattctt  putative PPT
                                     ttttcttta  TA-rich tract