1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cttaaattgcatggttgtggttgattgcagttaataaaatatttgtgaagttgaattaatggatagtttattgatgtgattctatttttctttcttgaagGTGGAGCAAAGGTACAGGCAGTACCAGCAGCAGATGGAGATAGTGGTTTCATCGTTTGAGCAAGCTGCGGGGATTGGTTCTGCGAGGACTTACACTGCCC
species | Glycine max |
transcript | GLYMA19G38690.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GACAAGAAATTCAGATGAAGAAAGCCAAACTAATCGGTATGCTTGATGAG GTGGAGCAAAGGTACAGGCAGTACCAGCAGCAGATGGAGATAGTGGTTTCAEST: gi|254330843|gb|GR842108.1|GR842108
genomic: GACAAGAAATTCAGATGAAGAAAGCCAAACTAATCGGTATGCTTGATGAGgtatgtgttg ... tttcttgaagGTGGAGCAAAGGTACAGGCAGTACCAGCAGCAGATGGAGATAGTGGTTTCA
EST: GACAAGAAATTCAGATGAAGAAAGCCAAACTAATCGGTATGCTTGATGAG GTGGAGCAAAGGTACAGGCAGTACCAGCAGCAGATGGAGATAGTGGTTTCAEST: gi|17152797|gb|BM142730.1|BM142730
genomic: GACAAGAAATTCAGATGAAGAAAGCCAAACTAATCGGTATGCTTGATGAGgtatgtgttg ... tttcttgaagGTGGAGCAAAGGTACAGGCAGTACCAGCAGCAGATGGAGATAGTGGTTTCA
EST: GACAAGAAATTCAGATGAAGAAAGCCAAACTAATCGGTATGCTTGATGAG GTGGAGCAAAGGTACAGGCAGTACCAGCAGCAGATGGAGATAGTGGTTTCA
genomic: GACAAGAAATTCAGATGAAGAAAGCCAAACTAATCGGTATGCTTGATGAGgtatgtgttg ... tttcttgaagGTGGAGCAAAGGTACAGGCAGTACCAGCAGCAGATGGAGATAGTGGTTTCA
tgaagttgaattaatggatagtttattgatgtgattctatttttctttcttgaagGTGGAGCAAAGGTACAGGCAGTACCAGCAGCAGATGGAGATAGTGGTTTCATCGTTTGAGCAAGCTGCGGGGATTGGTTCTGCGAGGACTTACACTGCCC
tattgat putative branch site (score: 3)
ttctatttttctttct putative PPT
attctatttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttaaattgcatggttgtggttgattgcagttaataaaatatttgtgaagttgaattaatggatagtttattgatgtgattctatttttctttcttgaagGTGGAGCAAAGGTACAGGCAGTACCAGCAGCAGATGGAGATAGTGGTTTCATCGTTTGAGCAAGCTGCGGGGATTGGTTCTGCGAGGACTTACACTGCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - gcatggt
- - - - - - - - gtggttg
- - - - - - - - - - - - -tgcagtt
- - - - - - - - - - - - - - - - aataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgtg