1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttagcatctacaaattgctacatttggtttctttttttttttttttgcaaattggttgttaaatcgcttcttgtttgacttcaatatatcgtttttacagGATGACGCACATATATTTTGTTTAGATGACCAGATTAAAGATGAGATCAGGGGTGTCCTAGATCTTACTGAAGAAATACTATTGCAATTTGGTTTTGAAA
species | Glycine max |
transcript | GLYMA19G37550.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AACTATCTGGAAGTTTACATGGCCTTTTCCGTGTTAGAGGTTTCACACAG GATGACGCACATATATTTTGTTTAGATGACCAGATTAAAGATGAGATCAGG
genomic: AACTATCTGGAAGTTTACATGGCCTTTTCCGTGTTAGAGGTTTCACACAGgtttgttgtt ... gtttttacagGATGACGCACATATATTTTGTTTAGATGACCAGATTAAAGATGAGATCAGG
tgcaaattggttgttaaatcgcttcttgtttgacttcaatatatcgtttttacagGATGACGCACATATATTTTGTTTAGATGACCAGATTAAAGATGAGATCAGGGGTGTCCTAGATCTTACTGAAGAAATACTATTGCAATTTGGTTTTGAAA
gtttgac putative branch site (score: 4)
tcgttttt putative PPT
aatatatcgttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttagcatctacaaattgctacatttggtttctttttttttttttttgcaaattggttgttaaatcgcttcttgtttgacttcaatatatcgtttttacagGATGACGCACATATATTTTGTTTAGATGACCAGATTAAAGATGAGATCAGGGGTGTCCTAGATCTTACTGAAGAAATACTATTGCAATTTGGTTTTGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - -tgctaca
- - - - - - - - - - - - - - - - - - - - - ttttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - -ggttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gacttca