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...ttgttgttatatttccaaaggacaaaaaaaaagatttttttttctttttcaaagattacatttgagcaatttgttaatgtaagttgactgaatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGTCGGGGCTTATCAAG
species | Glycine max |
transcript | GLYMA19G35710.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GACCTGGTGCTCCAATTATCTTCAATTGT GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGEST: gi|9901982|gb|BE610950.1|BE610950
genomic: GACCTGGTGCTCCAATTATCTTCAATTGTgtaagtatgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAG
EST: GACCTGGTGCTCCAATTATCTTCAATTGT GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGEST: gi|193534902|gb|FK489066.1|FK489066
genomic: GACCTGGTGCTCCAATTATCTTCAATTGTgtaagtatgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAG
EST: GACCTGGTGCTCCAATTATCTTCAATTGT GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGEST: gi|193665609|gb|FK609230.1|FK609230
genomic: GACCTGGTGCTCCAATTATCTTCAATTGTgtaagtatgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAG
EST: GACCTGGTGCTCCAATTATCTTCAATTGT GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACEST: gi|22523592|gb|BU082403.1|BU082403
genomic: GACCTGGTGCTCCAATTATCTTCAATTGTgtaagtatgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAAC
EST: GACCTGGTGCTCCAATTATCTTCAATTGT GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGEST: gi|193635563|gb|FK582088.1|FK582088
genomic: GACCTGGTGCTCCAATTATCTTCAATTGTgtaagtatgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAG
EST: GACCTGGTGCTCCAATTATCTTCAATTGT GTGATTGAGATTGGGAAAGGGAGCAAGGTGTAAATEST: gi|22540225|gb|BU090068.1|BU090068
genomic: GACCTGGTGCTCCAATTATCTTCAATTGTgtaagtatgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTG-AAAT
EST: GACCTGGTGCTCCA-TTAATCTTTAATTGT GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGEST: gi|193314904|gb|FK281404.1|FK281404
genomic: GACCTGGTGCTCCAATTA-TCTTCAATTGTgtaagtatgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAG
EST: GACCTGGTGCTCCAATTATCTTCAATTGT GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGEST: gi|193576426|gb|FK530793.1|FK530793
genomic: GACCTGGTGCTCCAATTATCTTCAATTGTgtaagtatgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAG
EST: GACCTGGTGCTCCAATTATCTTCTAATTTGT GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACEST: gi|298189455|gb|HO037858.1|HO037858
genomic: GACCTGGTGCTCCAATTATCTTC-AATT-GTgtaagtatgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAAC
EST: GACCTGGTGCTCCAATTATCTTCAATTGT GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACGAAAAGEST: gi|8669991|gb|BE191098.1|BE191098
genomic: GACCTGGTGCTCCAATTATCTTCAATTGTgtaagtatgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAG
EST: GACCTGGTGCTCCAATTATCTTCAATTGT GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGEST: gi|208156025|gb|GD954529.1|GD954529
genomic: GACCTGGTGCTCCAATTATCTTCAATTGTgtaagtatgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAG
EST: CCAATTATCTTCAATTGT GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGEST: gi|17964359|gb|BM271095.1|BM271095
genomic: CCAATTATCTTCAATTGTgtaagtatgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAG
EST: GACCTGGTGCTCCAATTATCTTCAATTGT GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGEST: gi|298182727|gb|HO031462.1|HO031462
genomic: GACCTGGTGCTCCAATTATCTTCAATTGTgtaagtatgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAG
EST: GACCTGGTGCTCCAATTATCTTCAATTGT GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGEST: gi|207833133|gb|GD801810.1|GD801810
genomic: GACCTGGTGCTCCAATTATCTTCAATTGTgtaagtatgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAG
EST: GACCTGGTGCTCCAATTTATTCTTTCAATTGT GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAA
genomic: GACCTGGTGCTCCAA-TTA-TC-TTCAATTGTgtaagtatgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAA
ttttcaaagattacatttgagcaatttgttaatgtaagttgactgaatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGTCGGGGCTTATCAAG
aatttgttaatgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgttgttatatttccaaaggacaaaaaaaaagatttttttttctttttcaaagattacatttgagcaatttgttaatgtaagttgactgaatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGTCGGGGCTTATCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG