1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttaagtagtagttaacttacctgtcactgattatccctttcctaataatattagaatccatatttttctgtttccatttacttggctagctttcttgtagATTAGGGATGAACTAGAAAACCTACTTGATGACGACGACGACATGGCTGATCTTTACTTATCAAGAAAATTGGCTGCTTCATCCTCTCCAACTAGTAGCT
species | Glycine max |
transcript | GLYMA19G34430.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGCGGAAATTGAAATGTGCAATGACCAGGTTGACAATTCGAGTTCAAAAG ATTAGGGATGAACTAGAAAACCTACTTGATGACGACGACGACATGGCTGATEST: gi|10237341|gb|BE806229.1|BE806229
genomic: TGCGGAAATTGAAATGTGCAATGACCAGGTTGACAATTCGAGTTCAAAAGgtatgtcgaa ... tttcttgtagATTAGGGATGAACTAGAAAACCTACTTGATGACGACGACGACATGGCTGAT
EST: TGCGGAAATTGAAATGTGCAATGACCAGGTTGACAATTCGAGTTCAAAAG ATTAGGGATGAACTAGAAAACCTACTTGATGACGACGACGACATGGCTGATEST: gi|10232059|gb|BE800947.1|BE800947
genomic: TGCGGAAATTGAAATGTGCAATGACCAGGTTGACAATTCGAGTTCAAAAGgtatgtcgaa ... tttcttgtagATTAGGGATGAACTAGAAAACCTACTTGATGACGACGACGACATGGCTGAT
EST: GCGGAAATTGAAATGTGCAATGACCAGGTTGACAATTCGAGTTCAAAAG ATTAGGGATGAACTAGAAAACCTACTTGATGACGACGACGACATGGCTGAT
genomic: GCGGAAATTGAAATGTGCAATGACCAGGTTGACAATTCGAGTTCAAAAGgtatgtcgaa ... tttcttgtagATTAGGGATGAACTAGAAAACCTACTTGATGACGACGACGACATGGCTGAT
taatattagaatccatatttttctgtttccatttacttggctagctttcttgtagATTAGGGATGAACTAGAAAACCTACTTGATGACGACGACGACATGGCTGATCTTTACTTATCAAGAAAATTGGCTGCTTCATCCTCTCCAACTAGTAGCT
ctttcttgt CT-rich tract
atatttttctgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaagtagtagttaacttacctgtcactgattatccctttcctaataatattagaatccatatttttctgtttccatttacttggctagctttcttgtagATTAGGGATGAACTAGAAAACCTACTTGATGACGACGACGACATGGCTGATCTTTACTTATCAAGAAAATTGGCTGCTTCATCCTCTCCAACTAGTAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - ctgtcac
- - - - - - - - - - - - - - - - - ccctttc