1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaaatttttgttttaagaattcacagcagatggagttgtattaatgttcattcaattcaatcacaaggcttgcaaacatttcagGTAATGCTAAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGA
species | Glycine max |
transcript | GLYMA19G34180.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATCGAACGGGCCAG GTAATGCTAAAAATGAAGAGCAGACATGTTGCAGGAACCATTACC-AAAAGEST: gi|193708580|gb|FK644972.1|FK644972
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATCGAACGGGCCAGgtaaattttt ... aacatttcagGTAATGCTAAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
EST: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATCGAACGGGCCAG GTAATGCTAAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGEST: gi|207758641|gb|GD728687.1|GD728687
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATCGAACGGGCCAGgtaaattttt ... aacatttcagGTAATGCTAAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
EST: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATCGAACGGGCCAG GTAATGCTAAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAA-GEST: gi|193358947|gb|FK325377.1|FK325377
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATCGAACGGGCCAGgtaaattttt ... aacatttcagGTAATGCTAAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
EST: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATCGAACGGGCCAG GTAATGCTAAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGEST: gi|207830641|gb|GD802487.1|GD802487
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATCGAACGGGCCAGgtaaattttt ... aacatttcagGTAATGCTAAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
EST: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATCGAACGGGCCAG GTAATGCTAAAAATGEST: gi|208199691|gb|GD999946.1|GD999946
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATCGAACGGGCCAGgtaaattttt ... aacatttcagGTAATGCTAAAAATG
EST: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATCGAACGGGCCAG GTAATGCTAAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAEST: gi|193363294|gb|FK325782.1|FK325782
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATCGAACGGGCCAGgtaaattttt ... aacatttcagGTAATGCTAAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAA
EST: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATCGAACGGGCCAG GTAATGCTAAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATCGAACGGGCCAGgtaaattttt ... aacatttcagGTAATGCTAAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
atggagttgtattaatgttcattcaattcaatcacaaggcttgcaaacatttcagGTAATGCTAAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGA
tattaat putative branch site (score: 2)
tattaatgttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatttttgttttaagaattcacagcagatggagttgtattaatgttcattcaattcaatcacaaggcttgcaaacatttcagGTAATGCTAAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA