Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattcaatgggagaagtttattagatccccaaaccatgcaattaatgactttttcatgcatgcattaacgttttttttaatacctttatgcagACTCTGAACGATAAACGGGCTAAATGCAAATGTATAAACATGCAGAAGTCAGAAGCAGATCAAGTTGCTTGAGTTTCTTTTGTACAGGTAATAAAAAGGA

Basic information

species Glycine max
transcript GLYMA19G32600.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254341126|gb|GR854854.1|GR854854
EST:     TGTTGGACTTGGCTGTAGACTACATAAAAGATCTTCAGAAAGAATTCAAG                         ACTCTGAACGATAAACGGGCTAAATGCAAATGTATAAACATGCAGAAGTCA
genomic: TGTTGGACTTGGCTGTAGACTACATAAAAGATCTTCAGAAAGAATTCAAGgtattcaatg ... ctttatgcagACTCTGAACGATAAACGGGCTAAATGCAAATGTATAAACATGCAGAAGTCA
EST: gi|51341156|gb|CO982473.1|CO982473
EST:     TGTTGGACTTGGCTGTAGACTACATAAAAGATCTTCAGAAAGAATTCAAG                         ACTCTGAACGATAAACGGGCTAAATGCAAATGTATAAACATGCAGAAGTCA
genomic: TGTTGGACTTGGCTGTAGACTACATAAAAGATCTTCAGAAAGAATTCAAGgtattcaatg ... ctttatgcagACTCTGAACGATAAACGGGCTAAATGCAAATGTATAAACATGCAGAAGTCA
EST: gi|151403622|gb|EV273432.1|EV273432
EST:     TGTTGGACTTGGCTGTAGACTACATAAAAGATCTTCAGAAAGAGTTCAAG                         ACTCTGAACGATAAACGGGCTAAATGCAAATGTATAAACATGCAGAAGTCA
genomic: TGTTGGACTTGGCTGTAGACTACATAAAAGATCTTCAGAAAGAATTCAAGgtattcaatg ... ctttatgcagACTCTGAACGATAAACGGGCTAAATGCAAATGTATAAACATGCAGAAGTCA
EST: gi|254314306|gb|GR824547.1|GR824547
EST:     TGTTGGACTTGGCTGTAGACTACATAAAAGATCTTCAGAAAGAATTCAAG                         ACTCTGAACGATAAACGGGCTAAATGCAAATGTATAAACATGCAGAAGTCC
genomic: TGTTGGACTTGGCTGTAGACTACATAAAAGATCTTCAGAAAGAATTCAAGgtattcaatg ... ctttatgcagACTCTGAACGATAAACGGGCTAAATGCAAATGTATAAACATGCAGAAGTCA
EST: gi|254320647|gb|GR827096.1|GR827096
EST:     AAAGATCTTCAGAAAGAATTCAAG                         ACTCTGAACGATAAACGGGCTAAATGCAAATGTATAAACATGCAGAAGTCA
genomic: AAAGATCTTCAGAAAGAATTCAAGgtattcaatg ... ctttatgcagACTCTGAACGATAAACGGGCTAAATGCAAATGTATAAACATGCAGAAGTCA
EST: gi|209703009|gb|BW670146.1|BW670146
EST:     TGTTGGACTTGGCAGTAGACTACATAAAAGATCTTCAGAAAGAATTCAAG                         ACTCTGAACGATAAACGGGCTAAATGCAAATGTATAAACATGCAGAAGTCA
genomic: TGTTGGACTTGGCTGTAGACTACATAAAAGATCTTCAGAAAGAATTCAAGgtattcaatg ... ctttatgcagACTCTGAACGATAAACGGGCTAAATGCAAATGTATAAACATGCAGAAGTCA
EST: gi|254341127|gb|GR854855.1|GR854855
EST:     TGTTGGACTTGGCTGTAGACTACATAAAAGATCTTCAGAAAGAATTCAAG                         ACTCTGAACGATAAACGGGCTAAATGCAAATGTATAAACATGCAGAAGTCA
genomic: TGTTGGACTTGGCTGTAGACTACATAAAAGATCTTCAGAAAGAATTCAAGgtattcaatg ... ctttatgcagACTCTGAACGATAAACGGGCTAAATGCAAATGTATAAACATGCAGAAGTCA
EST: gi|213593532|gb|DB977364.1|DB977364
EST:     CAGAAAGAATTCAAG                         ACTCTGAACGATAAACGGGCTAAATGCAAATGTATAAACATGCAGAAGTCA
genomic: CAGAAAGAATTCAAGgtattcaatg ... ctttatgcagACTCTGAACGATAAACGGGCTAAATGCAAATGTATAAACATGCAGAAGTCA
EST: gi|15000621|gb|BI321435.1|BI321435
EST:     ATCTTCAGAAAGAATTCAAG                         ACTCTGAACGATAAACGGGCTAAATGCAAATGTATAAACATGCAGAAGTCA
genomic: ATCTTCAGAAAGAATTCAAGgtattcaatg ... ctttatgcagACTCTGAACGATAAACGGGCTAAATGCAAATGTATAAACATGCAGAAGTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caattaatgactttttcatgcatgcattaacgttttttttaatacctttatgcagACTCTGAACGATAAACGGGCTAAATGCAAATGTATAAACATGCAGAAGTCAGAAGCAGATCAAGTTGCTTGAGTTTCTTTTGTACAGGTAATAAAAAGGA
                                          taccttt  CT-rich tract
                         attaacgtttttttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtattcaatgggagaagtttattagatccccaaaccatgcaattaatgactttttcatgcatgcattaacgttttttttaatacctttatgcagACTCTGAACGATAAACGGGCTAAATGCAAATGTATAAACATGCAGAAGTCAGAAGCAGATCAAGTTGCTTGAGTTTCTTTTGTACAGGTAATAAAAAGGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA