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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaagcattgtgaatttgagatgcgcatgagccgtatttgaaaaggttgagcttgatatcaggagttatctccctttgcagGCTTTTTTGTTCAATGCTTTGTTCAGATCCTAAACTTGATTCACACCGATTCAAGGATATTCTCGATGAGGCTATAGCTTCAG

Basic information

species Glycine max
transcript GLYMA19G32480.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G32480.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os02g10220.1 (Oryza sativa), 3'ss of exon 5
-----------------gtaagaaagcattgtgaatttgagatgcgcatgagccgtatttgaaaaggttgagcttgat----atcaggagttatctccctt---tgcagGCTTTTTTGTTCAATGCTTTGTTCAGATCCTAAACTTGATTCACACCGATTCAAGGATATTCTCGATGAGGCTATAGCTTCAG
                 ||    |   ||| |  ||     | ||  ||||   | |  |||| |  ||| | |  ||    ||    | ||    |||||   ||||||||||||||||||||| |||| |||||||| || |||||||| || || || || |||||  | |||||||| || |||  ||
gtggcttacaaaatttagtgttgattaattttctatacagaaggca-atgaattgcaagtgaataa-ttgggttccatttctattttaatttggtgcccttgtatgcagGCTTTTTTGTTCAATGATTTGCTCAGATCCAAAGCTTGATTCCCATCGCTTTAAAGATATAATTGATGAGGCAATTGCTGAAG

upper sequence: GLYMA19G32480.1 (Glycine max), 3'ss of exon 5
lower sequence: AT3G12170.1 (Arabidopsis thaliana), 3'ss of exon 5
gtaagaaagcattgtgaatttgagatgcgcatgagccgtatttgaaaaggttgagcttgatatca--ggagttatctccctttgcagGCTTTTTTGTTCAATGCTTTGTTCAGATCCTAAACTTGATTCACACCGATTCAAGGATATTCTCGATGAGGCTATAGCTTCAG
||||  || |||       ||   ||     | |    | |  |   | |||    |  | || |  ||   ||| || |||| ||||||||| || ||||||||||| ||  | || || |||||||| ||||| ||||| |||||| |||||||||| || ||  | |
gtaattaatcatccccttgttttcattattgtcaagtttgtgagttgaagtttgtataaacattattggtactatatctcttt-cagGCTTTTCTGCTCAATGCTTTGCTCGAACCCCAAGCTTGATTCGCACCGTTTCAAAGATATTATCGATGAGGCCATTGCAGCGG

upper sequence: GLYMA19G32480.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv08s0007g07960.t01 (Vitis vinifera), 3'ss of exon 5
gtaagaaagcattgtgaatttgagatgcgcatgagccgtatttgaaaaggttgagcttgatatcaggagttatctccctttgcagGCTTTTTTGTTCAATGCTTTGTTCAGATCCTAAACTTGATTCACACCGATTCAAGGATATTCTCGATGAGGCTATAGCTTCAG
       |  || |  ||| ||     |   |      | ||| |         | |     ||   |  |   | ||||  ||||||||| ||||||||||||||||| || ||||| || |||||||||||||||||||||||||| |||||||| ||| |  |||
-----gtacaatagcaaatgtgtttcccttctttttttttttttaggcttgccggatcagcctcta-atctgctttccttctcagGCTTTTCTGTTCAATGCTTTGTTCTGACCCTAAGCTGGATTCACACCGATTCAAGGATATTCTTGATGAGGCAATATCAGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgagccgtatttgaaaaggttgagcttgatatcaggagttatctccctttgcagGCTTTTTTGTTCAATGCTTTGTTCAGATCCTAAACTTGATTCACACCGATTCAAGGATATTCTCGATGAGGCTATAGCTTCAG
                        gcttgat  putative branch site (score: 5)
                                       ttatctccctttgc  putative PPT
        tatttgaaaa  TA-rich tract