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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagaataaaacaggcacaatgttctctattcatgtacttttcaaattcagtgcacattcgttgcctaaaaatgtgatacaaagttttgcttatgcagGTCCCTTTTGCACGGTCTTCATTGAATCATGATGATGTATTCATCCTAGACACTCAGAATAAGATTTATCAATTCAATGGTGCAAACTCCAATATCCAGG

Basic information

species Glycine max
transcript GLYMA19G32010.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G32010.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os03g24220.2 (Oryza sativa), 3'ss of exon 5
gtcagaataaaacaggcacaatgttctctattcatgtacttttcaaattcagtgcaca-ttcgttgcctaaaaatgtg-atacaaagttttgcttatgcagGTCCCTTTTGCACGGTCTTCATTGAATCATGATGATGTATTCATCCTAGACACTCAGAATAAGATTTATCAATTCAATGGTGCAAACTCCAATATCCAGG
                        |  ||| |  |  || |  |   |||   |   | ||  |  ||| |   | |  | || || | |    ||| ||||| || ||||| || || ||||||||||||||||||||||| ||| | || ||  | || || || ||||||||||||||||||||||||||||| || |
-----------------------gtgactactatttcacctccctgtttcttagactactttatctcctcatgttatatacactaaatgtcctatattcagGTTCCATTTGCTCGCTCGTCATTGAATCATGATGATGTATTTATCTTGGATACGGAAAAGAAAATATATCAATTCAATGGTGCAAACTCCAATATTCAAG

upper sequence: GLYMA19G32010.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G081322_T01 (Zea mays), 3'ss of exon 5
gtcagaataaaacaggcacaatgttctctattcatgtacttttcaaattcagtgcacattcgttgcctaaaaatgtgata-caaagttttgcttatgcagGTCCCTTTTGCACGGTCTTCATTGAATCATGATGATGTATTCATCCTAGACACTCAGAATAAGATTTATCAATTCAATGGTGCAAACTCCAATATCCAGG
               |  || |||  || |  ||  | ||       |  |     |||  | ||  |||     |  ||     || ||  ||   ||||| || ||| | || || || ||||| ||||||||||| || ||| | || ||| |||| || || ||||||||||| |||||||||||||| ||||| |
---------------gtgcattgtgttccac-cacatcctcgcttcctgtatgtttcatcagctgtttaagccaatcctaatgctgtcttctttgctcagGTTCCATTTTCTCGTTCATCGTTGAACCATGATGATGTCTTTATCTTGGATACTGAGAACAAAATATATCAATTCAACGGTGCAAACTCCAACATCCAAG

upper sequence: GLYMA19G32010.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G047310_T02 (Zea mays), 3'ss of exon 5
gtcagaataaaacaggcacaatgttctctattcatgtacttttcaaattcagtgcacattcgttgcctaaaaatgtgatacaaagttttgcttatgcagGTCCCTTTTGCACGGTCTTCATTGAATCATGATGATGTATTCATCCTAGACACTCAGAATAAGATTTATCAATTCAATGGTGCAAACTCCAATATCCAGG
                     | |     |||||    |||     |     |  ||| |    ||  || |||  ||  |   |  ||  || | ||||| || || || ||||| ||||| || ||||||||||| ||  || |||| ||| | |||||||| || || || |||||||| |||||||||||||| |
--------------------gtatatgagattcacccccttactgcacattatttacaatttcagctcaataattggaccct--gccttctttgttcagGTTCCCTTCGCCCGGTCGTCATTAAACCATGATGATGTGTTTGTCTTAGATACTGAAAATAAGATATACCAGTTTAATGGTGCTAACTCCAATATCCAAG

upper sequence: GLYMA19G32010.1 (Glycine max), 3'ss of exon 5
lower sequence: AT3G57410.1 (Arabidopsis thaliana), 3'ss of exon 6
gtcagaataaaacaggcacaatgttctctattcatgtacttttcaaattcagtgcacattcgttgcctaaaaatgtg-atacaaagttttgcttatgcagGTCCCTTTTGCACGGTCTTCATTGAATCATGATGATGTATTCATCCTAGACACTCAGAATAAGATTTATCAATTCAATGGTGCAAACTCCAATATCCAGG
                  |  || |    |||  |  |  | | | | ||  | | |||  ||     | |  | |  |   |    ||| ||| || |||| ||||||||||| || ||  |||||||||||||||| || ||| | |||||  || | ||||||||||| || ||||||||||| || |||||||| |
-------------gttttctttgctgcagatttttagaagtgttacactctcttcgcatgagtgtttaatatgtatatacttatctcttttcttttgtagGTTCCTTTTGCACGCTCATCTCTGAATCATGATGATGTGTTTATCTTGGACACCAAGGAAAAGATTTATCAGTTTAATGGTGCAAATTCAAATATCCAAG

upper sequence: GLYMA19G32010.1 (Glycine max), 3'ss of exon 5
lower sequence: AT2G41740.1 (Arabidopsis thaliana), 3'ss of exon 5
gtcagaataaaacaggcacaatgttctctattcatgtacttttcaaattcagtgcacattcgt-tgcctaaaaatgtgatacaaagttttgcttatgcagGTCCCTTTTGCACGGTCTTCATTGAATCATGATGATGTATTCATCCTAGACACTCAGAATAAGATTTATCAATTCAATGGTGCAAACTCCAATATCCAGG
             |  ||   |  ||||  |  || ||           | |||   |    | | | | ||  | |  | |      |   || ||||||| |||||||| || || ||| ||||||||||||||||||| ||| | |||||  || | ||||| ||||| |||||||||||||| || || || ||||
--------gttttaaccattgtactctccttgtat-tagaacgagtgaacggtgattaccaatgtacatcaactttttcttctgttcctcttttttgcagGTTCCTTTTGCCCGCTCATCACTGAATCATGATGATGTATTTATCTTGGACACCGAGGAAAAGATCTATCAGTTCAATGGTGCAAATTCAAACATTCAGG

upper sequence: GLYMA19G32010.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv08s0007g08690.t01 (Vitis vinifera), 3'ss of exon 4
gtcagaataaaacaggcacaatgttctctattcatgtacttttcaaattcagtgcacattcgttgc-ctaaaaatgtgatacaaagttttgcttatgcagGTCCCTTTTGCACGGTCTTCATTGAATCATGATGATGTATTCATCCTAGACACTCAGAATAAGATTTATCAATTCAATGGTGCAAACTCCAATATCCAGG
               | |  || |||||    ||||||  |||||   ||    ||| |||  ||  ||  |  ||     |    ||||| || |||||||||| ||||| ||||||||| | ||||| |||||||| || ||||| |||||  | ||||| |||||||| |||||||||||||| |||||||||||||
---------------gtagtatattctcccaacatgta--tttcatgatctaatcacgttcactgtgctgcagctggtcacctgcattttggttgtgcagGTCCCCTTTGCTCGGTCTTCACTAAATCACGATGATGTGTTTATCCTGGACACAGAAAATAAAATTTATCAGTTCAATGGTGCAAATTCCAATATCCAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaattcagtgcacattcgttgcctaaaaatgtgatacaaagttttgcttatgcagGTCCCTTTTGCACGGTCTTCATTGAATCATGATGATGTATTCATCCTAGACACTCAGAATAAGATTTATCAATTCAATGGTGCAAACTCCAATATCCAGG
                    gcctaaa  putative branch site (score: 3)
                                         ttttgctt  putative PPT
                       taaaaatgt  TA-rich tract