1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...gtctacatttggtaccccaatgacccatatgtgtctagcaatgcattctattttggtatgttcttttcctttacctcacttcattcttcttttgaaacagGGTCATGGCTTCCGAAATGACCTTTTTCAAATGGTGGCAGATTTGAAACCAAAATTTCTCAGATTTCCAG
species | Glycine max |
transcript | GLYMA19G30460.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGAGTTACTTGTTAGACCAAGTGTCAGTTATGCCATTGGACACTTACATG GGTCATGGCTTCCGAAATGACCTTTTTCAAATGGTGGCAGATTTGAAACCAEST: gi|193315414|gb|FK278456.1|FK278456
genomic: GGAGTTACTTGTTAGACCAAGTGTCAGTTATGCCATTGGACACTTACATGgttagtagaa ... tttgaaacagGGTCATGGCTTCCGAAATGACCTTTTTCAAATGGTGGCAGATTTGAAACCA
EST: GGAGTTACTTGTTAGACCAAGTGTCAGTTATGCCATTGGACACTTACATG GGTCATGGCTTCCGAAATGACCTTTTTCAAATGGTGGCAGATTTGAAACCAEST: gi|193306339|gb|FK273320.1|FK273320
genomic: GGAGTTACTTGTTAGACCAAGTGTCAGTTATGCCATTGGACACTTACATGgttagtagaa ... tttgaaacagGGTCATGGCTTCCGAAATGACCTTTTTCAAATGGTGGCAGATTTGAAACCA
EST: GGAGCTACTTGTTAGACCAAGTGTCAGTTATGCCATTGGACACTTACATG GGTCATGGCTTCCGAAATGACCTTTTTCAAATGGTGGCAGEST: gi|193644926|gb|FK588774.1|FK588774
genomic: GGAGTTACTTGTTAGACCAAGTGTCAGTTATGCCATTGGACACTTACATGgttagtagaa ... tttgaaacagGGTCATGGCTTCCGAAATGACCTTTTTCAAATGGTGGCAG
EST: GTCAGTTATGCCATTGGACACTTACATG GGTCATGGCTTCCGAAATGACCTTTTTCAAATGGTGGCAGATTTGAAACCAEST: gi|193658776|gb|FK604701.1|FK604701
genomic: GTCAGTTATGCCATTGGACACTTACATGgttagtagaa ... tttgaaacagGGTCATGGCTTCCGAAATGACCTTTTTCAAATGGTGGCAGATTTGAAACCA
EST: GGAGTTACTTGTTAGACCAAGTGTCAGTTATGCCATTGGACACTTACATG GGTCATGGCTTCCGAAATGACCTTTTTCAAATGGTGGCAGATTTGAAACCAEST: gi|193605534|gb|FK557324.1|FK557324
genomic: GGAGTTACTTGTTAGACCAAGTGTCAGTTATGCCATTGGACACTTACATGgttagtagaa ... tttgaaacagGGTCATGGCTTCCGAAATGACCTTTTTCAAATGGTGGCAGATTTGAAACCA
EST: GGAGTTACTTGTTAGACCAAGTGTCAGTTATGCCATTGGACACTTACATG GGTCATGGCTTCCGAAATGACCTTTTTCAAATGGTGGCAGATTTGAAACCA
genomic: GGAGTTACTTGTTAGACCAAGTGTCAGTTATGCCATTGGACACTTACATGgttagtagaa ... tttgaaacagGGTCATGGCTTCCGAAATGACCTTTTTCAAATGGTGGCAGATTTGAAACCA
ttctattttggtatgttcttttcctttacctcacttcattcttcttttgaaacagGGTCATGGCTTCCGAAATGACCTTTTTCAAATGGTGGCAGATTTGAAACCAAAATTTCTCAGATTTCCAG
acctcac putative branch site (score: 3)
tatgttcttttccttt CT-rich tract
ttttgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctacatttggtaccccaatgacccatatgtgtctagcaatgcattctattttggtatgttcttttcctttacctcacttcattcttcttttgaaacagGGTCATGGCTTCCGAAATGACCTTTTTCAAATGGTGGCAGATTTGAAACCAAAATTTCTCAGATTTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- ctacatt
- - - - - - tacccca
- - - - - - - - - - tgaccca
- - - - - - - - - - - - - - - gtgtcta
- - - - - - - - - - - - - - - - - - - - - gcattct