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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagctccaattttatgtgctatagagacttcatgtgcagtagatttaatcccagaaattatcatttgcatctatcagtatgactaataatcgatctttcagAGGTTCTGCACTTGATTTTTCAAACTGGACAAAGGTGGAGAAGATACTGGTTGCCAAGGCAACAGATAATAACTCAAGACTTCAATTAACAACCACCACC

Basic information

species Glycine max
transcript GLYMA19G30450.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9820378|gb|BE555888.1|BE555888
EST:     TCATTGACTGGATCCAATGGTGTAGGAAACCTGGCTTCATCTGTGATCAC                         AGGTTCTGCACTTGATTTTTCAAACTGGACAAAGGTGGAGAAGATACTGGT
genomic: TCATTGACTGGATCCAATGGTGTAGGAAACCTGGCTTCATCTGTGATCACgtgagctcca ... gatctttcagAGGTTCTGCACTTGATTTTTCAAACTGGACAAAGGTGGAGAAGATACTGGT
EST: gi|24136140|gb|BU926650.1|BU926650
EST:     TCATTAACTGGATCGAATGGTGTAGGAAACCTGGCTTCATCTGTGATCAC                         AGGTTCTGCACTTGATTTTTCAAACTGGACAAAGGTGGAGAAGATACTGGT
genomic: TCATTGACTGGATCCAATGGTGTAGGAAACCTGGCTTCATCTGTGATCACgtgagctcca ... gatctttcagAGGTTCTGCACTTGATTTTTCAAACTGGACAAAGGTGGAGAAGATACTGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcccagaaattatcatttgcatctatcagtatgactaataatcgatctttcagAGGTTCTGCACTTGATTTTTCAAACTGGACAAAGGTGGAGAAGATACTGGTTGCCAAGGCAACAGATAATAACTCAAGACTTCAATTAACAACCACCACC
                                  gactaat  putative branch site (score: 2)
                                               tctttc  putative PPT
      agaaattatcattt  TA-rich tract