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...atatatagatggtaaagaactgctcaaagaagttcttggatttagtattatgatgaatttgacataaactcatgctatatcatattgtgtttttctccagGGTTTTGGAAATGTAGGGTCATGGGCTGCCCAATTAATTAGTGAGAAAGGTGGAAAAGTTGTAGCTGTGAGTGACATAACTGGAGCCATAAAGAACAGCA
species | Glycine max |
transcript | GLYMA19G28770.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AATGAGTATGGGAAGAGTGTATCTGGACAACGGTTTGTCATACAG GGTTTTGGAAATGTAGGGTCATGGGCTGCCCAATTAATTAGTGAGAAAGGTEST: gi|193531358|gb|FK483240.1|FK483240
genomic: AATGAGTATGGGAAGAGTGTATCTGGACAACGGTTTGTCATACAGgtacttgtgt ... ttttctccagGGTTTTGGAAATGTAGGGTCATGGGCTGCCCAATTAATTAGTGAGAAAGGT
EST: TGCTTAATGAGTATGGGAAGAGTGTATCTGGACAACGGTTTGTCATACAG GGTTTTGGAAATGTAGGGTCATGGGCTGCCCAATTAATTAGTGAGAAAGGTEST: gi|8826722|gb|BE210452.1|BE210452
genomic: TGCTTAATGAGTATGGGAAGAGTGTATCTGGACAACGGTTTGTCATACAGgtacttgtgt ... ttttctccagGGTTTTGGAAATGTAGGGTCATGGGCTGCCCAATTAATTAGTGAGAAAGGT
EST: TGCTTAATGAGTATGGGAAGAGTGTATCTGGACAACGGTTTGTCATACAG GGTTTTGGAAATGTANGGTCATGGGCTGCCCAATTAATTAGTGAGAAAGGTEST: gi|37997102|gb|CF808691.1|CF808691
genomic: TGCTTAATGAGTATGGGAAGAGTGTATCTGGACAACGGTTTGTCATACAGgtacttgtgt ... ttttctccagGGTTTTGGAAATGTAGGGTCATGGGCTGCCCAATTAATTAGTGAGAAAGGT
EST: TGCTTAATGAGTATGGGAAGAGTGTATCTGGACAACGGTTTGTCATACAG GGTTTTGGAAATGTAGGGTCATGGGCTGCCCAATTAATTAGTGAGAAAGGT
genomic: TGCTTAATGAGTATGGGAAGAGTGTATCTGGACAACGGTTTGTCATACAGgtacttgtgt ... ttttctccagGGTTTTGGAAATGTAGGGTCATGGGCTGCCCAATTAATTAGTGAGAAAGGT
tattatgatgaatttgacataaactcatgctatatcatattgtgtttttctccagGGTTTTGGAAATGTAGGGTCATGGGCTGCCCAATTAATTAGTGAGAAAGGTGGAAAAGTTGTAGCTGTGAGTGACATAACTGGAGCCATAAAGAACAGCA
atttgac putative branch site (score: 4)
ttgtgtttttctcc putative PPT
tatatcatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatatagatggtaaagaactgctcaaagaagttcttggatttagtattatgatgaatttgacataaactcatgctatatcatattgtgtttttctccagGGTTTTGGAAATGTAGGGTCATGGGCTGCCCAATTAATTAGTGAGAAAGGTGGAAAAGTTGTAGCTGTGAGTGACATAACTGGAGCCATAAAGAACAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - -gatggta
- - - - - - - - - -ctgctca
- - - - - - - - - - - - - - - -gttcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgct