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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctttttgatgccttacattttagcagttcttcctccccctgcctcaacacctatctctctagttttcctgtcttttacattgcaaaaatgtgaatttctctagttacaaatttaataattttttccttcttgcagGCACGAAAATCATGTGCGGTGACAACATTGGGTAGAGGTGGAAGTGATTTAACTGCTACAACAATTGGGAAAGCGCTAGGGTTGCCAGAAATCCAG

Basic information

species Glycine max
transcript GLYMA19G27500.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13311816|gb|BG405467.1|BG405467
EST:     ATTGGGTTTCTGATCCTGCTATTCCAATTGTTACAGGCTTCCTTGGAAAG                         GCACGAAAATCATGTGCGGTGACAACATTGGGTAGAGGGTG-AAGTGATTT
genomic: ATTGGGTTTCTGATCCTGCTATTCCAATTGTTACAGGCTTCCTTGGAAAGgtctttttga ... cttcttgcagGCACGAAAATCATGTGCGGTGACAACATTGGGTAGAGG-TGGAAGTGATTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcaaaaatgtgaatttctctagttacaaatttaataattttttccttcttgcagGCACGAAAATCATGTGCGGTGACAACATTGGGTAGAGGTGGAAGTGATTTAACTGCTACAACAATTGGGAAAGCGCTAGGGTTGCCAGAAATCCAG
                             atttaat  putative branch site (score: 4)
                                      ttttttccttcttgc  putative PPT
          tgaatttctctagtta  TA-rich tract